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SCNpilot_expt_300_bf_scaffold_289_curated

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Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_289_curated_1
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..166)
DNA (165bp) protein (55aa)
phosphoribosylaminoimidazolecarboxamide formyltransferase/imp cyclohydrolase (EC:2.1.2.3); K00602 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
Bifunctional purine biosynthesis protein PurH n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TQJ8_ALIDB
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_289_curated_2
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(248..484)
DNA (237bp) protein (79aa)
Helix-turn-helix Fis-type n=2 Tax=Alicycliphilus denitrificans RepID=E8TQJ9_ALIDB
Fis family transcriptional regulator; K03557 Fis family transcriptional regulator, factor for inversion stimulation protein
Helix-turn-helix Fis-type {ECO:0000313|EMBL:ADV01354.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_289_curated_3
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(462..1520)
DNA (1059bp) protein (353aa)
tim-barrel protein, nifr3 family; K05540 tRNA-dihydrouridine synthase B [EC:1.-.-.-]
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
tRNA-dihydrouridine synthase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TQK0_ALIDB
SCNpilot_expt_300_bf_scaffold_289_curated_4
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1669..2178
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TQK1_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV01356.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_289_curated_5
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2185..3159)
DNA (975bp) protein (325aa)
Regulatory protein LysR n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TQK2_ALIDB
LysR family transcriptional regulator
LysR family transcriptional regulator {ECO:0000313|EMBL:GAO24908.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_289_curated_6
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3355..4362
DNA (1008bp) protein (336aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TQK3_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV01358.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_289_curated_7
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4376..5821
DNA (1446bp) protein (482aa)
Amidohydrolase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TQK4_ALIDB
amidohydrolase; K12941 aminobenzoyl-glutamate utilization protein B
Amidohydrolase {ECO:0000313|EMBL:ADV01359.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_289_curated_8
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5877..6338)
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TQK5_ALIDB
hypothetical protein
Large integral membrane protein {ECO:0000313|EMBL:GAO24911.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_289_curated_9
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6836..7054
DNA (219bp) protein (73aa)
Uncharacterized protein id=12553101 bin=BDI species=Microvirga sp. WSM3557 genus=Microvirga taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Uncharacterized protein {ECO:0000313|EMBL:EIM25781.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
SCNpilot_expt_300_bf_scaffold_289_curated_10
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7378..7866)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TR10_ALIDB
hypothetical protein
Small integral membrane protein {ECO:0000313|EMBL:GAO24912.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_289_curated_11
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8062..9444)
DNA (1383bp) protein (461aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
ATP-binding region ATPase domain protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TR11_ALIDB
ATP-binding region atpase domain protein
SCNpilot_expt_300_bf_scaffold_289_curated_12
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9441..9989)
DNA (549bp) protein (183aa)
Transcriptional regulator domain-containing protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TR12_ALIDB
transcriptional regulator domain-containing protein; K02483 two-component system, OmpR family, response regulator
Transcriptional regulator domain-containing protein {ECO:0000313|EMBL:ADV01363.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_289_curated_13
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10143..11237)
DNA (1095bp) protein (365aa)
Ribosome-binding ATPase YchF n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TR13_ALIDB
GTP-binding protein YchF; K06942
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_289_curated_14
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11290..12168)
DNA (879bp) protein (293aa)
Fe-S protein n=1 Tax=Acidovorax avenae RepID=UPI000319D874
MOSC domain-containing protein; K07140
MOSC domain protein beta barrel domain protein {ECO:0000313|EMBL:ABM31484.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
SCNpilot_expt_300_bf_scaffold_289_curated_15
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12389..14005
DNA (1617bp) protein (539aa)
glucose-methanol-choline oxidoreductase (EC:1.1.99.1); K00108 choline dehydrogenase [EC:1.1.99.1]
Glucose-methanol-choline oxidoreductase n=1 Tax=Burkholderia sp. (strain 383) RepID=Q397S8_BURS3
Choline dehydrogenase {ECO:0000313|EMBL:KGJ01458.1}; Flags: Fragment;; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
SCNpilot_expt_300_bf_scaffold_289_curated_16
Pseudomonas sp. CF161, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14451..16760
DNA (2310bp) protein (770aa)
Acyl-CoA dehydrogenase domain protein n=1 Tax=Pseudomonas sp. CF161 RepID=S6IR60_9PSED
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:EPL07095.1}; TaxID=911241 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. CF161.;"
acyl-CoA dehydrogenase domain-containing protein
SCNpilot_expt_300_bf_scaffold_289_curated_17
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16831..18339
DNA (1509bp) protein (503aa)
aldehyde dehydrogenase (EC:1.2.99.3)
Aldehyde dehydrogenase (Acceptor) n=1 Tax=Burkholderia sp. (strain 383) RepID=Q39MW6_BURS3
Betaine-aldehyde dehydrogenase {ECO:0000313|EMBL:KGJ05094.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
SCNpilot_expt_300_bf_scaffold_289_curated_18
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18411..19439
DNA (1029bp) protein (343aa)
Possible TrapT family, dctP subunit, C4-dicarboxylate periplasmic binding protein n=1 Tax=Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601) RepID=Q0FWG7_PELBH
Uncharacterized protein {ECO:0000313|EMBL:KGJ02818.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
TRAP dicarboxylate transporter-DctP subunit
SCNpilot_expt_300_bf_scaffold_289_curated_19
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19520..20044
DNA (525bp) protein (175aa)
Flagellum-specific ATP synthase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H747_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KGJ01638.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_289_curated_20
Pseudomonas sp. FGI182, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20041..21327
DNA (1287bp) protein (429aa)
Putative transmembrane protein n=1 Tax=Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601) RepID=Q0FWH5_PELBH
C4-dicarboxylate ABC transporter permease {ECO:0000313|EMBL:AHD14609.1}; TaxID=1259844 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. FGI182.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_289_curated_21
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21541..23157
DNA (1617bp) protein (539aa)
GMC family oxidoreductase n=1 Tax=Pseudomonas plecoglossicida NB2011 RepID=S2JVE0_9PSED
dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
SCNpilot_expt_300_bf_scaffold_289_curated_22
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23214..24179
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GFG7_ALIDK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB83899.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_289_curated_23
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24216..25175
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QXB6_RALPI
Uncharacterized protein {ECO:0000313|EMBL:AGW93891.1}; TaxID=1366050 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii DTP0602.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_289_curated_24
Burkholderia lata, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25300..26379
DNA (1080bp) protein (360aa)
2-nitropropane dioxygenase, NPD n=1 Tax=Burkholderia sp. (strain 383) RepID=Q39MX5_BURS3
2-nitropropane dioxygenase
2-nitropropane dioxygenase, NPD {ECO:0000313|EMBL:ABB06191.1}; TaxID=482957 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia lata (strain ATCC 17760 / LMG 22485 / NCIMB 9086 / R18194; / 383).;"
SCNpilot_expt_300_bf_scaffold_289_curated_25
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26610..27683
DNA (1074bp) protein (358aa)
Porin Gram-negative type n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T174_ACIDE
Porin Gram-negative type {ECO:0000313|EMBL:EER61818.1}; Flags: Precursor;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
porin
SCNpilot_expt_300_bf_scaffold_289_curated_26

Not on your lists

comp(28132..29793)
DNA (1662bp) protein (554aa)
Acyl-CoA dehydrogenase n=1 Tax=uncultured bacterium RepID=G9FCC0_9BACT
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:AEV57461.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
acyl-CoA dehydrogenase; K14448 (2S)-methylsuccinyl-CoA dehydrogenase
SCNpilot_expt_300_bf_scaffold_289_curated_27
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29814..31025)
DNA (1212bp) protein (404aa)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T158_ACIDE
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:EER61802.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
L-carnitine dehydratase/bile acid-inducible protein F; K14470 mesaconyl-CoA C1-C4 CoA transferase
SCNpilot_expt_300_bf_scaffold_289_curated_28
Burkholderia lata, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31203..32411)
DNA (1209bp) protein (403aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
Acetyl-CoA C-acetyltransferase {ECO:0000313|EMBL:ABB06195.1}; EC=2.3.1.9 {ECO:0000313|EMBL:ABB06195.1};; TaxID=482957 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia lata (strain ATCC 17760 / LMG 22485 / NCIMB 9086 / R18194; / 383).;"
Acetyl-CoA C-acetyltransferase n=1 Tax=Burkholderia sp. (strain 383) RepID=Q39MX1_BURS3
SCNpilot_expt_300_bf_scaffold_289_curated_29
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32418..34373)
DNA (1956bp) protein (652aa)
acetate--CoA ligase (EC:6.2.1.1); K01895 acetyl-CoA synthetase [EC:6.2.1.1]
AMP-dependent synthetase and ligase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T154_ACIDE
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:EER61798.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
SCNpilot_expt_300_bf_scaffold_289_curated_30
Burkholderia lata, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34377..34847)
DNA (471bp) protein (157aa)
MaoC-like dehydratase n=1 Tax=Burkholderia sp. (strain 383) RepID=Q39MW9_BURS3
acyl dehydratase MaoC
MaoC-like dehydratase {ECO:0000313|EMBL:ABB06197.1}; TaxID=482957 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia lata (strain ATCC 17760 / LMG 22485 / NCIMB 9086 / R18194; / 383).;"
Displaying items 1-30 of 48 in total

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