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SCNpilot_expt_300_bf_scaffold_431_curated

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Displaying items 1-30 of 191 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_431_curated_1
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..453)
DNA (453bp) protein (151aa)
GCN5-related N-acetyltransferase n=2 Tax=Alicycliphilus denitrificans RepID=E8U1Y5_ALIDB
GCN5-like N-acetyltransferase
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:AEB86242.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_431_curated_2
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(775..1617)
DNA (843bp) protein (281aa)
ATPase associated with various cellular activities AAA_5 n=2 Tax=Alicycliphilus denitrificans RepID=E8U1Y4_ALIDB
ATPase AAA
AAA ATPase central domain protein {ECO:0000313|EMBL:AEB86243.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_431_curated_3
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1738..2397
DNA (660bp) protein (220aa)
Cytochrome c class I n=2 Tax=Alicycliphilus denitrificans RepID=E8U1Y3_ALIDB
cytochrome c class I
Periplasmic cytochrome type-c oxidoreductase protein {ECO:0000313|EMBL:GAO24861.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_431_curated_4
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2845..3717
DNA (873bp) protein (291aa)
UspA domain-containing protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U1Y2_ALIDB
UspA domain-containing protein
UspA domain-containing protein {ECO:0000313|EMBL:GAO24859.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_431_curated_5
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3652..4086)
DNA (435bp) protein (145aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U1Y1_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV01234.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_431_curated_6
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4109..4912)
DNA (804bp) protein (268aa)
Beta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR family n=2 Tax=Alicycliphilus denitrificans RepID=E8U1Y0_ALIDB
IclR family transcriptional regulator; K02624 IclR family transcriptional regulator, pca regulon regulatory protein
Transcriptional regulator, IclR family {ECO:0000313|EMBL:AEB86247.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_431_curated_7
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5015..5710
DNA (696bp) protein (232aa)
3-oxoacid CoA-transferase subunit A (EC:2.8.3.6); K01031 3-oxoadipate CoA-transferase, alpha subunit [EC:2.8.3.6]
3-oxoacid CoA-transferase, A subunit {ECO:0000313|EMBL:AEB86248.1}; EC=2.8.3.6 {ECO:0000313|EMBL:AEB86248.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
3-oxoacid CoA-transferase, A subunit n=2 Tax=Alicycliphilus denitrificans RepID=E8U1X9_ALIDB
SCNpilot_expt_300_bf_scaffold_431_curated_8
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5737..6381
DNA (645bp) protein (215aa)
3-oxoacid CoA-transferase subunit B (EC:2.8.3.6); K01032 3-oxoadipate CoA-transferase, beta subunit [EC:2.8.3.6]
3-oxoacid CoA-transferase, B subunit {ECO:0000313|EMBL:ADV01231.1}; EC=2.8.3.6 {ECO:0000313|EMBL:ADV01231.1};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
3-oxoacid CoA-transferase, B subunit n=2 Tax=Alicycliphilus denitrificans RepID=E8U1X8_ALIDB
SCNpilot_expt_300_bf_scaffold_431_curated_9
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6459..7661
DNA (1203bp) protein (401aa)
beta-ketoadipyl CoA thiolase (EC:2.3.1.174)
Beta-ketoadipyl CoA thiolase {ECO:0000313|EMBL:ADV01230.1}; EC=2.3.1.174 {ECO:0000313|EMBL:ADV01230.1};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Beta-ketoadipyl CoA thiolase n=2 Tax=Alicycliphilus denitrificans RepID=E8U1X7_ALIDB
SCNpilot_expt_300_bf_scaffold_431_curated_10
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7714..8439
DNA (726bp) protein (242aa)
3-oxoacyl-ACP reductase (EC:1.1.1.100)
Short-chain dehydrogenase/reductase SDR n=2 Tax=Alicycliphilus denitrificans RepID=E8U1X6_ALIDB
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADV01229.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_431_curated_11
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8480..9472
DNA (993bp) protein (331aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U1X5_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB86252.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_431_curated_12
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9591..9887)
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6UD46_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KGH31893.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
YCII-related domain-containing protein 1; K09780 hypothetical protein
SCNpilot_expt_300_bf_scaffold_431_curated_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9963..10682)
DNA (720bp) protein (240aa)
intradiol ring-cleavage dioxygenase; K04098 hydroxyquinol 1,2-dioxygenase [EC:1.13.11.37]
Intradiol ring-cleavage dioxygenase n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5D1D2_VARPS
Intradiol ring-cleavage dioxygenase {ECO:0000313|EMBL:ACS22702.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_300_bf_scaffold_431_curated_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10679..11773)
DNA (1095bp) protein (365aa)
ABC transporter permease n=1 Tax=Variovorax paradoxus RepID=UPI00035D0351
Variovorax paradoxus strain MEDvA23 contig_99, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ20098.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
SCNpilot_expt_300_bf_scaffold_431_curated_15
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11786..12754)
DNA (969bp) protein (323aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003737A48
extra-cytoplasmic solute receptor family protein 104
Extra-cytoplasmic solute receptor family protein 104 {ECO:0000313|EMBL:ADP17528.1}; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
SCNpilot_expt_300_bf_scaffold_431_curated_16
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12802..13629)
DNA (828bp) protein (276aa)
sulfatase family protein 9 (EC:3.1.6.-)
Sulfatase family protein 9 {ECO:0000313|EMBL:ADP17527.1}; EC=3.1.6.- {ECO:0000313|EMBL:ADP17527.1};; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
Sulfatase family protein 9 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HW47_ACHXA
SCNpilot_expt_300_bf_scaffold_431_curated_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15197..15904)
DNA (708bp) protein (236aa)
ABC transporter ATP-binding protein n=1 Tax=Curvibacter lanceolatus RepID=UPI0003627447
Variovorax paradoxus strain MEDvA23 contig_99, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ20100.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_300_bf_scaffold_431_curated_18
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15907..16626)
DNA (720bp) protein (240aa)
ABC-type branched-chain amino acid transport system, ATPase component n=1 Tax=Variovorax sp. CF313 RepID=J2T140_9BURK
ABC-type branched-chain amino acid transport system, ATPase component {ECO:0000313|EMBL:EJL71667.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative branched-chain amino acid ABC transporter, ATP-binding protein
SCNpilot_expt_300_bf_scaffold_431_curated_19
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16653..17555)
DNA (903bp) protein (301aa)
MetA-pathway phenol degradation-like protein n=2 Tax=Burkholderia cenocepacia RepID=B1K235_BURCC
MetA-pathway phenol degradation-like protein
Putative uncharacterized protein {ECO:0000313|EMBL:EAY65993.1}; TaxID=350702 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia PC184.;"
SCNpilot_expt_300_bf_scaffold_431_curated_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17581..18834)
DNA (1254bp) protein (418aa)
Putative ABC transporter, branched-chain amino acid-binding protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XNB6_VARPD
putative ABC transporter, branched-chain amino acid-binding protein
Putative ABC transporter, branched-chain amino acid-binding protein {ECO:0000313|EMBL:AGU53600.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_300_bf_scaffold_431_curated_21
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18891..19979)
DNA (1089bp) protein (363aa)
Iron-containing alcohol dehydrogenase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MGW6_9BURK
Maleylacetate reductase {ECO:0000313|EMBL:KGY28872.1}; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
iron-containing alcohol dehydrogenase
SCNpilot_expt_300_bf_scaffold_431_curated_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20007..20942)
DNA (936bp) protein (312aa)
Putative Bug-like extra-cytoplasmic solute receptor, TTT family n=1 Tax=Variovorax paradoxus B4 RepID=T1XL71_VARPD
putative Bug-like extra-cytoplasmic solute receptor, TTT family
Putative Bug-like extra-cytoplasmic solute receptor, TTT family {ECO:0000313|EMBL:AGU53602.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_300_bf_scaffold_431_curated_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20977..22485)
DNA (1509bp) protein (503aa)
betaine-aldehyde dehydrogenase n=1 Tax=Curvibacter lanceolatus RepID=UPI00036488A5
putative aldehyde dehydrogenase
Putative aldehyde dehydrogenase {ECO:0000313|EMBL:AGU53603.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_300_bf_scaffold_431_curated_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22551..23558)
DNA (1008bp) protein (336aa)
hydroquinone dioxygenase large subunit n=1 Tax=Variovorax paradoxus RepID=UPI00036B6F54
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGU53604.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_300_bf_scaffold_431_curated_25
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23603..24109)
DNA (507bp) protein (169aa)
hydroquinone dioxygenase small subunit n=1 Tax=Curvibacter lanceolatus RepID=UPI000374E8C5
Variovorax paradoxus strain MEDvA23 contig_84, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ21840.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_431_curated_26
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24345..25292
DNA (948bp) protein (316aa)
Transcriptional regulator, LysR family n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5D1C1_VARPS
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ACS22691.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_300_bf_scaffold_431_curated_27
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25319..27190)
DNA (1872bp) protein (624aa)
Potassium efflux system protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U1W2_ALIDB
Potassium efflux system protein {ECO:0000313|EMBL:ADV01215.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
potassium efflux system protein; K11745 glutathione-regulated potassium-efflux system ancillary protein KefC
SCNpilot_expt_300_bf_scaffold_431_curated_28
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27308..27946
DNA (639bp) protein (213aa)
Lysine exporter protein (LYSE/YGGA) n=2 Tax=Alicycliphilus denitrificans RepID=E8U1W1_ALIDB
lysine exporter protein LysE/YggA; K05834 homoserine/homoserine lactone efflux protein
Lysine exporter protein (LYSE/YGGA) {ECO:0000313|EMBL:AEB86266.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_431_curated_29
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28027..28647
DNA (621bp) protein (207aa)
Cobyrinic acid ac-diamide synthase n=2 Tax=Alicycliphilus denitrificans RepID=E8U1W0_ALIDB
cobyrinic acid ac-diamide synthase; K03496 chromosome partitioning protein
Cobyrinic acid ac-diamide synthase {ECO:0000313|EMBL:AEB86267.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_431_curated_30
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28724..29047)
DNA (324bp) protein (108aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U1V9_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO24836.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
Displaying items 1-30 of 191 in total

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