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SCNpilot_expt_300_bf_scaffold_148_curated

Search features with annotation key words

Displaying items 1-30 of 122 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_148_curated_1
unknown

Not on your lists

comp(107..715)
DNA (609bp) protein (203aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_148_curated_2
unknown

Not on your lists

comp(715..822)
DNA (108bp) protein (36aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_148_curated_3
Thauera terpenica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(836..2557)
DNA (1722bp) protein (574aa)
Uncharacterized protein n=1 Tax=Thauera terpenica 58Eu RepID=S9ZKE7_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:EPZ13967.1}; TaxID=1348657 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera terpenica 58Eu.;"
YD repeat-containing protein
SCNpilot_expt_300_bf_scaffold_148_curated_4
Methylomicrobium album, Methylomicrobium, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2667..3728)
DNA (1062bp) protein (354aa)
RHS repeat-associated core domain protein n=1 Tax=Methylomicrobium album BG8 RepID=H8GHJ6_METAL
RHS repeat-associated core domain protein {ECO:0000313|EMBL:EIC30148.1}; TaxID=686340 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomicrobium.;" source="Methylomicrobium album BG8.;"
Rhs family protein
SCNpilot_expt_300_bf_scaffold_148_curated_5
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3995..4237
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIY9_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU62654.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
SCNpilot_expt_300_bf_scaffold_148_curated_6
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4443..4643)
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJN0_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU62952.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
SCNpilot_expt_300_bf_scaffold_148_curated_7
unknown

Not on your lists

comp(5127..5288)
DNA (162bp) protein (54aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_148_curated_8
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5448..8255
DNA (2808bp) protein (936aa)
TPR repeat n=1 Tax=Nitrosospira sp. APG3 PF4_9PROT">RepID=M5DPF4_9PROT
TPR repeat {ECO:0000313|EMBL:CCU61320.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
tetratricopeptide repeat protein,methyltransferase family protein
SCNpilot_expt_300_bf_scaffold_148_curated_9
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8310..8762)
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002DE8FAB
host cell attachment-required protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
SCNpilot_expt_300_bf_scaffold_148_curated_10
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(9267..12428)
DNA (3162bp) protein (1054aa)
Multidrug efflux transporter n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PHC4_9BACT
Multidrug efflux transporter {ECO:0000313|EMBL:CBK42661.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
multidrug efflux transporter
SCNpilot_expt_300_bf_scaffold_148_curated_11
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12441..13631)
DNA (1191bp) protein (397aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. CMAA1215 RepID=U6ZP87_9PSED
AcrA {ECO:0000313|EMBL:EYR69767.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
multidrug efflux transporter, membrane fusion protein
SCNpilot_expt_300_bf_scaffold_148_curated_12
Pseudomonas sp. CMAA1215, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13814..14185
DNA (372bp) protein (124aa)
MerR family transcriptional regulator n=1 Tax=Pseudomonas sp. CMAA1215 RepID=U7A5Z6_9PSED
MerR family transcriptional regulator {ECO:0000313|EMBL:ERO65886.1}; TaxID=1387231 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. CMAA1215.;"
soxR-2; redox-sensitive transcriptional activator SoxR 2
SCNpilot_expt_300_bf_scaffold_148_curated_13
unknown

Not on your lists

comp(14779..15753)
DNA (975bp) protein (325aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_148_curated_14
Burkholderia multivorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15776..16927)
DNA (1152bp) protein (384aa)
hypothetical protein n=1 Tax=Burkholderia sp. JPY347 RepID=UPI000379C816
Conjugal transfer protein TraB {ECO:0000313|EMBL:KHS14662.1}; TaxID=87883 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia multivorans.;"
putative conjugal transfer protein traB
SCNpilot_expt_300_bf_scaffold_148_curated_15
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17157..17675)
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) RepID=A3PS69_RHOS1
hypothetical protein
Rhodobacter sphaeroides 2.4.1 plasmid E, partial sequence {ECO:0000313|EMBL:ABA81807.1}; Flags: Precursor;; TaxID=272943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM; 158).;"
SCNpilot_expt_300_bf_scaffold_148_curated_16
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17727..22331)
DNA (4605bp) protein (1535aa)
YD repeat protein n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) RepID=Q3HKD8_RHOS4
YD repeat-containing protein
Rhodobacter sphaeroides 2.4.1 plasmid E, partial sequence {ECO:0000313|EMBL:ABA81806.1}; TaxID=272943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM; 158).;"
SCNpilot_expt_300_bf_scaffold_148_curated_17
unknown

Not on your lists

comp(22422..22601)
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_148_curated_18
GWA2_Gallionellales_54_124_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22754..23086)
DNA (333bp) protein (111aa)
Phage transcriptional regulator n=1 Tax=uncultured bacterium RepID=K2DME0_9BACT
transcriptional regulator, XRE family
Tax=GWA2_Gallionellales_54_124_curated
SCNpilot_expt_300_bf_scaffold_148_curated_19
unknown

Not on your lists

comp(23258..23422)
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_148_curated_20
unknown

Not on your lists

23513..23701
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_148_curated_21
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23781..25154)
DNA (1374bp) protein (458aa)
homospermidine synthase (EC:2.5.1.44); K00808 homospermidine synthase [EC:2.5.1.44]
Homospermidine synthase {ECO:0000313|EMBL:ABB74998.1}; EC=2.5.1.44 {ECO:0000313|EMBL:ABB74998.1};; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
Homospermidine synthase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y8C3_NITMU
SCNpilot_expt_300_bf_scaffold_148_curated_22
unknown

Not on your lists

comp(25551..25658)
DNA (108bp) protein (36aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_148_curated_23
unknown

Not on your lists

comp(25674..25952)
DNA (279bp) protein (93aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_148_curated_24
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26118..26783
DNA (666bp) protein (222aa)
Probableacetyltransferase/hydrolase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHN9_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KIO49145.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
putativeacetyltransferase/hydrolase
SCNpilot_expt_300_bf_scaffold_148_curated_25
unknown

Not on your lists

comp(26595..26981)
DNA (387bp) protein (129aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_148_curated_26
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27021..28202
DNA (1182bp) protein (394aa)
PUTATIVE ZINC PROTEASE PROTEIN n=1 Tax=Nitrosospira sp. APG3 RepID=M5DI28_9PROT
PUTATIVE ZINC PROTEASE PROTEIN {ECO:0000313|EMBL:CCU62073.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
aminopeptidase
SCNpilot_expt_300_bf_scaffold_148_curated_27
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28252..30222)
DNA (1971bp) protein (657aa)
Phage integrase:Chain length determinant protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHU3_9PROT
Integrase {ECO:0000313|EMBL:KIO49146.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Phage integrase
SCNpilot_expt_300_bf_scaffold_148_curated_28
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31259..32035
DNA (777bp) protein (259aa)
Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y8B9_NITMU
Dioxygenase {ECO:0000313|EMBL:KIO49148.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
extradiol ring-cleavage dioxygenase III subunit B
SCNpilot_expt_300_bf_scaffold_148_curated_29
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32238..33035)
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFY3_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU61334.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_148_curated_30
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33512..36844
DNA (3333bp) protein (1111aa)
Sensory box/GGDEF family protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DPG2_9PROT
Sensory box/GGDEF family protein {ECO:0000313|EMBL:CCU61335.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
diguanylate cyclase/phosphodiesterase
Displaying items 1-30 of 122 in total

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