name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_300_bf_scaffold_299_curated_1
unknown
|
Not on your lists |
comp(2..94)
|
This feature has no annotations |
|
SCNpilot_expt_300_bf_scaffold_299_curated_2
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(159..1265)
|
Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (Forms a complex with YaeT, YfiO, and YfgL) Lipoprotein-34 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJ51_9PROT
Lipoprotein {ECO:0000313|EMBL:KIO48985.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
NlpBDapX lipoprotein; K07287 lipoprotein-34
|
|
SCNpilot_expt_300_bf_scaffold_299_curated_3
unknown
|
Not on your lists |
1290..1529
|
This feature has no annotations |
|
SCNpilot_expt_300_bf_scaffold_299_curated_4
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1464..2357)
|
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000255|HAMAP-Rule:MF_00418}; Short=HTPA synthase {ECO:0000255|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000255|HAMAP-Rule:MF_00418};; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=DAPA_NITMU
rbh
|
|
SCNpilot_expt_300_bf_scaffold_299_curated_5
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2664..5273)
|
ClpB protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKM3_9PROT
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
ATPase with chaperone activity; K03695 ATP-dependent Clp protease ATP-binding subunit ClpB
|
|
SCNpilot_expt_300_bf_scaffold_299_curated_6
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
5469..6347
|
Quinolinate phosphoribosyltransferase [decarboxylating] {ECO:0000313|EMBL:CCU63437.1}; EC=2.4.2.19 {ECO:0000313|EMBL:CCU63437.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19); K00767 nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
Quinolinate phosphoribosyltransferase [decarboxylating] n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKQ0_9PROT
|
|
SCNpilot_expt_300_bf_scaffold_299_curated_7
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
6978..8252
|
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745B84
Uncharacterized protein {ECO:0000313|EMBL:EEF62673.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
|
|
SCNpilot_expt_300_bf_scaffold_299_curated_8
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(8317..8610)
|
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHA7_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KIO48364.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein
|
|
SCNpilot_expt_300_bf_scaffold_299_curated_9
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
9214..10419
|
Transporter, monovalent cation:proton antiporter-2 (CPA2) family n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLA5_9PROT
Sodium:proton exchanger {ECO:0000313|EMBL:KIO48897.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Sodium/hydrogen exchanger
|
|
SCNpilot_expt_300_bf_scaffold_299_curated_10
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
10416..11531
|
Putative glutamate--cysteine ligase 2 {ECO:0000256|HAMAP-Rule:MF_01609}; EC=6.3.2.2 {ECO:0000256|HAMAP-Rule:MF_01609, ECO:0000256|SAAS:SAAS00078222};; Gamma-glutamylcysteine synthetase 2 {ECO:0000256|HAMAP-Rule:MF_01609}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
carboxylate-amine ligase; K06048 carboxylate-amine ligase [EC:6.3.-.-]
Carboxylate-amine ligase EBAPG3_24820 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKM6_9PROT
|
|
SCNpilot_expt_300_bf_scaffold_299_curated_11
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11756..12529
|
Glutamine amidotransferase, class I n=1 Tax=Nitrosospira sp. APG3 RepID=M5DVT0_9PROT
Glutamine amidotransferase, class I {ECO:0000313|EMBL:CCU63440.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
peptidase C26; K07010 putative glutamine amidotransferase
|
|
SCNpilot_expt_300_bf_scaffold_299_curated_12
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12607..14070)
|
Threonine synthase {ECO:0000313|EMBL:CCU63450.1}; EC=4.2.3.1 {ECO:0000313|EMBL:CCU63450.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
Threonine synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DVT9_9PROT
|
|
SCNpilot_expt_300_bf_scaffold_299_curated_13
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(14192..15508)
|
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
Homoserine dehydrogenase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJ63_9PROT
|
|
SCNpilot_expt_300_bf_scaffold_299_curated_14
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(15585..16832)
|
Aspartate aminotransferase {ECO:0000313|EMBL:CCU63452.1}; EC=2.6.1.1 {ECO:0000313|EMBL:CCU63452.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
Aspartate aminotransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKR1_9PROT
|
|
SCNpilot_expt_300_bf_scaffold_299_curated_15
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
16958..17404
|
Membrane protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKN6_9PROT
Membrane protein {ECO:0000313|EMBL:CCU63454.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein; K09008 hypothetical protein
|
|
SCNpilot_expt_300_bf_scaffold_299_curated_16
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(17459..18679)
|
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) n=1 Tax=Nitrosospira sp. APG3 RepID=M5DVU5_9PROT
Histidine kinase {ECO:0000313|EMBL:KIO48903.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
response regulator receiver/diguanylate phosphodiesterase
|
|
SCNpilot_expt_300_bf_scaffold_299_curated_17
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(18926..23098)
|
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
InterPro IPR000014:IPR001789:IPR002106:IPR002570:IPR003594:IPR00366 0 :IPR003661:IPR004358:IPR005467 COGs COG0642 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKR3_9PROT
multi-sensor hybrid histidine kinase
|
|
SCNpilot_expt_300_bf_scaffold_299_curated_18
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(23095..24426)
|
Urea ABC transporter, urea binding protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLB9_9PROT
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KIO48905.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
ABC transporter, periplasmic binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
|
|
SCNpilot_expt_300_bf_scaffold_299_curated_19
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(24617..25561)
|
Deacetylases, including yeast histone deacetylase and acetoin utilization protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKN9_9PROT
Deacetylases, including yeast histone deacetylase and acetoin utilization protein {ECO:0000313|EMBL:CCU63459.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
histone deacetylase superfamily protein
|
|
SCNpilot_expt_300_bf_scaffold_299_curated_20
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
25958..27898
|
GGDEF and EAL domain proteins n=1 Tax=Nitrosospira sp. APG3 RepID=M5DVV0_9PROT
Diguanylate cyclase {ECO:0000313|EMBL:KIO48907.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
diguanylate cyclase/phosphodiesterase
|
|
SCNpilot_expt_300_bf_scaffold_299_curated_21
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
28070..30226
|
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJ72_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KIO48908.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein
|
|
SCNpilot_expt_300_bf_scaffold_299_curated_22
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
30333..31352
|
fructose-bisphosphate aldolase (EC:4.1.2.13); K01623 fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
Fructose-bisphosphate aldolase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKR7_9PROT
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
|
|
SCNpilot_expt_300_bf_scaffold_299_curated_23
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(31389..31781)
|
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DS49_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU62205.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
|
|
SCNpilot_expt_300_bf_scaffold_299_curated_24
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
32078..33193
|
Probable transmembrane protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKH8_9PROT
Probable transmembrane protein {ECO:0000313|EMBL:CCU63369.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
transmembrane protein
|
|
SCNpilot_expt_300_bf_scaffold_299_curated_25
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(33274..34632)
|
phospholipase D/transphosphatidylase; K06131 cardiolipin synthase [EC:2.7.8.-]
Cardiolipin synthetase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLC4_9PROT
Cardiolipin synthase {ECO:0000313|EMBL:KIO48910.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
|
|
SCNpilot_expt_300_bf_scaffold_299_curated_26
unknown
|
Not on your lists |
34885..35478
|
This feature has no annotations |
|
SCNpilot_expt_300_bf_scaffold_299_curated_27
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(35438..35911)
|
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DVV6_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU63465.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
YbhB and YbcL; K06910
|
|
SCNpilot_expt_300_bf_scaffold_299_curated_28
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(36112..36561)
|
Inosine-5'-monophosphate dehydrogenase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLC8_9PROT
Histidine kinase {ECO:0000313|EMBL:KIO48911.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
signal-transduction protein
|
|
SCNpilot_expt_300_bf_scaffold_299_curated_29
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(36705..37163)
|
Heat shock protein Hsp20 n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9V1_NITMU
heat shock protein Hsp20; K13993 HSP20 family protein
Heat shock protein Hsp20 {ECO:0000313|EMBL:ABB74470.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
|
|
SCNpilot_expt_300_bf_scaffold_299_curated_30
unknown
|
Not on your lists |
comp(37254..37535)
|
This feature has no annotations |