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SCNpilot_expt_300_bf_scaffold_266_curated

Search features with annotation key words

Displaying items 1-30 of 91 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_266_curated_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

101..307
DNA (207bp) protein (69aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037A141F
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_300_bf_scaffold_266_curated_2
unknown

Not on your lists

comp(1318..1662)
DNA (345bp) protein (115aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_266_curated_3
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1896..2171)
DNA (276bp) protein (92aa)
Uncharacterized protein {ECO:0000313|EMBL:KDV24793.1}; TaxID=1395570 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia JBK9.;"
Putative uncharacterized protein id=1342992 bin=GWE1_T_denit_62_9 species=Comamonas testosteroni genus=Comamonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
SCNpilot_expt_300_bf_scaffold_266_curated_4
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2238..4493)
DNA (2256bp) protein (752aa)
Uncharacterized protein n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QMP4_AZOSU
Uncharacterized protein {ECO:0000313|EMBL:EXI85588.1}; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_266_curated_5
Acinetobacter pittii, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4490..4972)
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Acinetobacter soli CIP 110264 RepID=N9BHS0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:CDH41722.1}; TaxID=1147132 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii complex.;" source="Acinetobacter pittii 42F.;"
SCNpilot_expt_300_bf_scaffold_266_curated_6
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4965..5294)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QMP2_AZOSU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV24622.1}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
SCNpilot_expt_300_bf_scaffold_266_curated_7
unknown

Not on your lists

comp(5294..5806)
DNA (513bp) protein (171aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_266_curated_8
unknown

Not on your lists

comp(5836..6522)
DNA (687bp) protein (229aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_266_curated_9
unknown

Not on your lists

comp(6537..6701)
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_266_curated_10
unknown

Not on your lists

comp(6698..6943)
DNA (246bp) protein (82aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_266_curated_11
Gallionella capsiferriformans, Gallionella, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6936..8330)
DNA (1395bp) protein (465aa)
Replicative DNA helicase n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SHU7_GALCS
replicative DNA helicase
Replicative DNA helicase {ECO:0000313|EMBL:ADL56037.1}; TaxID=395494 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Gallionella.;" source="Gallionella capsiferriformans (strain ES-2) (Gallionella ferruginea; capsiferriformans (strain ES-2)).;"
SCNpilot_expt_300_bf_scaffold_266_curated_12
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8327..9103)
DNA (777bp) protein (259aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SH67_THIDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ98022.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_300_bf_scaffold_266_curated_13
unknown

Not on your lists

comp(9100..9303)
DNA (204bp) protein (68aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_266_curated_14
Pectobacterium carotovorum, Pectobacterium, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9305..9508)
DNA (204bp) protein (68aa)
Putative DNA binding protein n=1 Tax=Erwinia tracheiphila PSU-1 RepID=R9NLS8_9ENTR
Dipicolinate synthase {ECO:0000313|EMBL:KHS72455.1}; TaxID=180957 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pectobacterium.;" source="Pectobacterium carotovorum subsp. brasiliense.;"
DNA binding protein; K07733 prophage regulatory protein
SCNpilot_expt_300_bf_scaffold_266_curated_15
unknown

Not on your lists

comp(9593..10150)
DNA (558bp) protein (186aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_266_curated_16
unknown

Not on your lists

comp(10189..10470)
DNA (282bp) protein (94aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_266_curated_17
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10467..11120)
DNA (654bp) protein (218aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SH64_THIDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ98025.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_300_bf_scaffold_266_curated_18
Thiocapsa marina, Thiocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11217..12485)
DNA (1269bp) protein (423aa)
Integrase family protein n=1 Tax=Thiocapsa marina 5811 RepID=F9UC04_9GAMM
Integrase family protein {ECO:0000313|EMBL:EGV18472.1}; TaxID=768671 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocapsa.;" source="Thiocapsa marina 5811.;"
integrase family protein
SCNpilot_expt_300_bf_scaffold_266_curated_19
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12976..13551
DNA (576bp) protein (192aa)
peroxiredoxin-like protein; K03564 peroxiredoxin Q/BCP [EC:1.11.1.15] id=12495641 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
peroxiredoxin-like protein; K03564 peroxiredoxin Q/BCP [EC:1.11.1.15]
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_300_bf_scaffold_266_curated_20
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13544..14785
DNA (1242bp) protein (414aa)
diguanylate cyclase/phosphodiesterase id=12495640 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
diguanylate cyclase/phosphodiesterase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_300_bf_scaffold_266_curated_21
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14878..15435)
DNA (558bp) protein (186aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; K00995 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] id=12495639 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; K00995 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_300_bf_scaffold_266_curated_22
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15448..19257)
DNA (3810bp) protein (1270aa)
ATP-dependent helicase HrpA; K03578 ATP-dependent helicase HrpA [EC:3.6.4.13]
ATP-dependent helicase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003757ED5
ATP-dependent helicase HrpA {ECO:0000313|EMBL:AAZ97961.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_300_bf_scaffold_266_curated_23
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19391..20074)
DNA (684bp) protein (228aa)
integral membrane protein id=12495637 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
integral membrane protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_300_bf_scaffold_266_curated_24
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20127..20801
DNA (675bp) protein (225aa)
hypothetical protein; K07039 uncharacterized protein id=12495636 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein; K07039 uncharacterized protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97963.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_300_bf_scaffold_266_curated_25
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20835..21509
DNA (675bp) protein (225aa)
phosphoserine phosphatase (EC:3.1.3.3) id=12495635 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
phosphoserine phosphatase (EC:3.1.3.3)
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_300_bf_scaffold_266_curated_26
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21521..22507
DNA (987bp) protein (329aa)
hypothetical protein id=12495634 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97966.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_300_bf_scaffold_266_curated_27
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22530..23000)
DNA (471bp) protein (157aa)
BadM/Rrf2 family transcriptional regulator; K13771 Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor id=12495633 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
BadM/Rrf2 family transcriptional regulator; K13771 Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_300_bf_scaffold_266_curated_28
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23229..25514
DNA (2286bp) protein (762aa)
putative nitric oxide reductase (subunit B) transmembrane protein; K04561 nitric oxide reductase subunit B [EC:1.7.2.5] id=12495632 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
putative nitric oxide reductase (subunit B) transmembrane protein; K04561 nitric oxide reductase subunit B [EC:1.7.2.5]
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
SCNpilot_expt_300_bf_scaffold_266_curated_29
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25692..26294
DNA (603bp) protein (201aa)
RnfABCDGE type electron transport complex subunit A; K03617 electron transport complex protein RnfA id=12495631 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
RnfABCDGE type electron transport complex subunit A; K03617 electron transport complex protein RnfA
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_300_bf_scaffold_266_curated_30
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26294..26860
DNA (567bp) protein (189aa)
electron transport complex protein RnfB; K03616 electron transport complex protein RnfB id=12495630 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
electron transport complex protein RnfB; K03616 electron transport complex protein RnfB
Electron transport complex subunit B {ECO:0000255|HAMAP-Rule:MF_00463}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Displaying items 1-30 of 91 in total

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