ggKbase home page

SCNpilot_expt_300_bf_scaffold_221_curated

Search features with annotation key words

Displaying items 1-30 of 68 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_221_curated_1
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..358
DNA (357bp) protein (119aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035F317D
Uncharacterized protein {ECO:0000313|EMBL:AJP47694.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_221_curated_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

493..792
DNA (300bp) protein (100aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003680820
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_300_bf_scaffold_221_curated_3
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

815..1696
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036D8D51
putative replication initiator and transcription repressor protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_300_bf_scaffold_221_curated_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2059..2469
DNA (411bp) protein (137aa)
ParA n=1 Tax=Thiobacillus denitrificans RepID=UPI00036BC195
cobyrinic acid a,c-diamide synthase; K03496 chromosome partitioning protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_300_bf_scaffold_221_curated_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2466..2711
DNA (246bp) protein (82aa)
parB partition protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037E0639
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_300_bf_scaffold_221_curated_6
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2708..3241
DNA (534bp) protein (178aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037C0AB2
Transposase {ECO:0000313|EMBL:AJP47690.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_221_curated_7
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3238..3762
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003743BE1
Peptidase {ECO:0000313|EMBL:AJP47689.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
putative conjugal transfer TRAF transmembrane protein
SCNpilot_expt_300_bf_scaffold_221_curated_8
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4058..6007
DNA (1950bp) protein (650aa)
Uncharacterized protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VUX8_POLNA
Type VI secretion protein {ECO:0000313|EMBL:AJP47688.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_221_curated_9
unknown

Not on your lists

comp(6149..6298)
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_221_curated_10
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6730..6993
DNA (264bp) protein (88aa)
Putative integral membrane protein n=1 Tax=Moorea producens 3L RepID=F4XNG2_9CYAN
Putative signal peptide protein {ECO:0000313|EMBL:CDI03471.1}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_221_curated_11
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6996..7847
DNA (852bp) protein (284aa)
UPF0276 protein WQE_40134 n=1 Tax=Burkholderia terrae BS001 RepID=I5CH91_9BURK
UPF0276 protein BN874_1740007 {ECO:0000256|HAMAP-Rule:MF_00697}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
h16_A1821; hypothetical protein; K09930 hypothetical protein
SCNpilot_expt_300_bf_scaffold_221_curated_12
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7831..8649
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Burkholderia terrae BS001 RepID=I5CH92_9BURK
Uncharacterized protein {ECO:0000313|EMBL:CDH44556.1}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
h16_A1820; hypothetical protein
SCNpilot_expt_300_bf_scaffold_221_curated_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8677..9108
DNA (432bp) protein (144aa)
MerR family transcriptional regulator id=1311326 bin=GWE1_T_denit_62_9 species=Rhodanobacter sp. 115 genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
MerR family transcriptional regulator
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_300_bf_scaffold_221_curated_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9101..9358
DNA (258bp) protein (86aa)
Thioredoxin/glutaredoxin id=1311325 bin=GWE1_T_denit_62_9 species=Acidithiobacillus caldus genus=Acidithiobacillus taxon_order=Acidithiobacillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
thioredoxin/glutaredoxin
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_300_bf_scaffold_221_curated_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9412..10026
DNA (615bp) protein (205aa)
Cytochrome c biogenesis protein, transmembrane region id=1311324 bin=GWE1_T_denit_62_9 species=Acidithiobacillus caldus genus=Acidithiobacillus taxon_order=Acidithiobacillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
cytochrome c biogenesis protein, transmembrane region
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_300_bf_scaffold_221_curated_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10028..10723
DNA (696bp) protein (232aa)
Putative cytochrome c biogenesis protein id=1311323 bin=GWE1_T_denit_62_9 species=Rhodanobacter sp. 115 genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
putative Cytochrome c biogenesis protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_300_bf_scaffold_221_curated_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10763..11188
DNA (426bp) protein (142aa)
DUF1791 protein id=1311322 bin=GWE1_T_denit_62_9 species=Halothiobacillus neapolitanus genus=Halothiobacillus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein; K09004 hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_300_bf_scaffold_221_curated_18
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11255..11836
DNA (582bp) protein (194aa)
Thiol:disulfide interchange protein DsbG n=2 Tax=Acidithiobacillus caldus RepID=F9ZS47_ACICS
Thiol:disulfide interchange protein DsbG; K03805 thiol:disulfide interchange protein DsbG
Tax=RBG_16_Betaproteobacteria_66_20_curated
SCNpilot_expt_300_bf_scaffold_221_curated_19
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11921..12418)
DNA (498bp) protein (166aa)
protein tyrosine phosphatase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037D3EA5
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_300_bf_scaffold_221_curated_20
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12436..12807)
DNA (372bp) protein (124aa)
protein tyrosine phosphatase; K03741 arsenate reductase [EC:1.20.4.1] id=12498604 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
protein tyrosine phosphatase; K03741 arsenate reductase [EC:1.20.4.1]
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_300_bf_scaffold_221_curated_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12897..13370)
DNA (474bp) protein (158aa)
Glyoxalase/bleomycin resistance protein/dioxygenase id=1320302 bin=GWE1_T_denit_62_9 species=unknown genus=Methylovorus taxon_order=Methylophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Glyoxalase/bleomycin resistance protein/dioxygenase
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_300_bf_scaffold_221_curated_22
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13382..13720)
DNA (339bp) protein (113aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000373C9BA
arsR; arsenical resistance operon repressor
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_300_bf_scaffold_221_curated_23
Rubellimicrobium thermophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13914..14894
DNA (981bp) protein (327aa)
Phosphate ABC transporter substrate-binding protein, PhoT family n=1 Tax=Rubellimicrobium thermophilum DSM 16684 RepID=S9QUH6_9RHOB
Phosphate ABC transporter substrate-binding protein, PhoT family {ECO:0000313|EMBL:EPX83242.1}; TaxID=1123069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium thermophilum DSM 16684.;"
phosphate binding protein; K02040 phosphate transport system substrate-binding protein
SCNpilot_expt_300_bf_scaffold_221_curated_24
Sinorhizobium sp. M14, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14980..15927
DNA (948bp) protein (316aa)
PstC n=1 Tax=Sinorhizobium sp. M14 RepID=E9KN58_9RHIZ
PstC {ECO:0000313|EMBL:AFR74885.1}; Putative phosphate ABC transporter permease PstC inner membrane subunit {ECO:0000313|EMBL:ADO95179.1}; TaxID=430451 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium sp. M14.;"
phosphate ABC transporter permease; K02037 phosphate transport system permease protein
SCNpilot_expt_300_bf_scaffold_221_curated_25
Rubellimicrobium thermophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15927..16886
DNA (960bp) protein (320aa)
Phosphate ABC transporter membrane protein 2, PhoT family n=1 Tax=Rubellimicrobium thermophilum DSM 16684 RepID=S9SAG1_9RHOB
Phosphate ABC transporter membrane protein 2, PhoT family {ECO:0000313|EMBL:EPX83244.1}; TaxID=1123069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium thermophilum DSM 16684.;"
phosphate ABC transporter permease; K02038 phosphate transport system permease protein
SCNpilot_expt_300_bf_scaffold_221_curated_26
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16961..17773
DNA (813bp) protein (271aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
phosphate ABC transporter ATPase; K02036 phosphate transport system ATP-binding protein [EC:3.6.3.27]
Phosphate ABC transporter ATPase n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q8H8_9RHIZ
SCNpilot_expt_300_bf_scaffold_221_curated_27
R_Gallionellales_57_47, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17791..18516
DNA (726bp) protein (242aa)
Phosphate-specific transport system accessory protein PhoU n=1 Tax=Oceanibaculum indicum P24 RepID=K2KLZ4_9PROT
Phosphate uptake regulator, PhoU; K02039 phosphate transport system protein
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_57_47_curated
SCNpilot_expt_300_bf_scaffold_221_curated_28
Pseudomonas xanthomarina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19258..20544
DNA (1287bp) protein (429aa)
Arsenical pump membrane protein n=1 Tax=Alcaligenes faecalis subsp. faecalis NCIB 8687 RepID=J0BHP9_ALCFA
Arsenical pump membrane protein {ECO:0000256|RuleBase:RU004993}; TaxID=271420 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas xanthomarina.;"
arsenical pump membrane protein; K03893 arsenical pump membrane protein
SCNpilot_expt_300_bf_scaffold_221_curated_29
unknown

Not on your lists

20717..20842
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_221_curated_30
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20845..21750
DNA (906bp) protein (302aa)
Transcriptional regulator, LysR family n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VUZ6_POLNA
LysR family transcriptional regulator
Tax=GWA2_Burkholderiales_64_37_curated
Displaying items 1-30 of 68 in total

View Taxonomy