ggKbase home page

SCNpilot_expt_500_bf_scaffold_318

Search features with annotation key words

Displaying items 1-30 of 63 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_318_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..460)
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037B185C
integrase family protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_bf_scaffold_318_2
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

828..1418
DNA (591bp) protein (197aa)
TetR family transcriptional regulator n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AE55_9PROT rbh
TetR family transcriptional regulator rbh
TetR family transcriptional regulator {ECO:0000313|EMBL:BAN34011.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
SCNpilot_expt_500_bf_scaffold_318_3
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1476..1892
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6A9F3_9PROT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN34010.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
SCNpilot_expt_500_bf_scaffold_318_4
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1904..2143
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AHL1_9PROT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN34009.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
SCNpilot_expt_500_bf_scaffold_318_5
unknown

Not on your lists

2976..3434
DNA (459bp) protein (153aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_318_6
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3431..5386
DNA (1956bp) protein (652aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) RepID=Q2RQN5_RHORT rbh
diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) rbh
Tax=RBG_16_Gammaproteobacteria_62_13__curated
SCNpilot_expt_500_bf_scaffold_318_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5682..5978
DNA (297bp) protein (99aa)
Histone-like DNA-binding protein id=1317127 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
histone-like DNA-binding protein; K03530 DNA-binding protein HU-beta
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_bf_scaffold_318_8
unknown

Not on your lists

comp(6320..6709)
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036FAE91
SCNpilot_expt_500_bf_scaffold_318_9
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6757..9900)
DNA (3144bp) protein (1048aa)
cation transporter n=1 Tax=Thiobacillus thioparus RepID=UPI0003699D2E rbh
CzcA family heavy metal efflux pump; K15726 cobalt-zinc-cadmium resistance protein CzcA rbh
Tax=GWA2_Rhodocyclales_65_20_curated
SCNpilot_expt_500_bf_scaffold_318_10
BJP_08E140C01_Dechloromonas_61_78, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9915..10256)
DNA (342bp) protein (114aa)
Nitrogen regulatory protein P-II n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SEI5_GALCS
nitrogen regulatory protein P-II
Tax=BJP_08E140C01_Dechloromonas_61_78
SCNpilot_expt_500_bf_scaffold_318_11
BJP_08E140C01_Dechloromonas_61_78, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10266..11795)
DNA (1530bp) protein (510aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036A868C rbh
RND family efflux transporter MFP subunit; K15727 cobalt-zinc-cadmium resistance protein CzcB rbh
Tax=BJP_08E140C01_Dechloromonas_61_78
SCNpilot_expt_500_bf_scaffold_318_12
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11804..13093)
DNA (1290bp) protein (430aa)
cobalt-zinc-cadmium resistance protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035CCF61 rbh
cobalt-zinc-cadmium outer membrane resistance protein; K15725 cobalt-zinc-cadmium resistance protein CzcC rbh
Probable cobalt-zinc-cadmium outer membrane resistance protein {ECO:0000313|EMBL:AAZ97282.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_500_bf_scaffold_318_13
unknown

Not on your lists

13328..13447
DNA (120bp) protein (40aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_318_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13648..15042)
DNA (1395bp) protein (465aa)
multi-sensor signal transduction histidine kinase (EC:2.7.3.-) rbh
histidine kinase n=1 Tax=Thiobacillus thioparus RepID=UPI00036FC468 rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_500_bf_scaffold_318_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15039..15590)
DNA (552bp) protein (184aa)
two component heavy metal response transcriptional regulator id=12498652 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
two component heavy metal response transcriptional regulator
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_500_bf_scaffold_318_16
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15885..16211
DNA (327bp) protein (109aa)
Multi-Cu oxidase n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SGA5_METPP
copA1; multi-Cu oxidase
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
SCNpilot_expt_500_bf_scaffold_318_17
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16208..17662
DNA (1455bp) protein (485aa)
Outer membrane efflux protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I7J7_9BURK
outer membrane efflux protein
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
SCNpilot_expt_500_bf_scaffold_318_18
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17735..19147
DNA (1413bp) protein (471aa)
Putative multicopper oxidase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WMH2_9BURK rbh
Putative multicopper oxidase {ECO:0000313|EMBL:EHR73137.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
multicopper oxidase type 3 rbh
SCNpilot_expt_500_bf_scaffold_318_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19175..19687
DNA (513bp) protein (171aa)
Putative copper-binding protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XJN1_VARPD
putative copper-binding protein
Blue (Type 1) copper domain protein {ECO:0000313|EMBL:ACS22275.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_500_bf_scaffold_318_20
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19724..20059
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. CF318 RepID=J2M0V6_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL91338.1}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_318_21
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20107..20325)
DNA (219bp) protein (73aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036E9239
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_500_bf_scaffold_318_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20563..21000
DNA (438bp) protein (146aa)
hypothetical protein id=12497695 bin=THIO_MID species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_500_bf_scaffold_318_23
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21012..21347
DNA (336bp) protein (112aa)
Conserved hypothetical secreted protein id=1351592 bin=GWE1_T_denit_62_9 species=Azoarcus sp. genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_500_bf_scaffold_318_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21380..21865
DNA (486bp) protein (162aa)
hypothetical protein id=12497693 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_bf_scaffold_318_25
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21924..22193
DNA (270bp) protein (90aa)
hypothetical protein id=1351594 bin=GWE1_T_denit_62_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_bf_scaffold_318_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22357..22821
DNA (465bp) protein (155aa)
Putative uncharacterized protein id=1351595 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_bf_scaffold_318_27
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22897..23151
DNA (255bp) protein (85aa)
id=4961696 bin=GWC2_Nitrospirae-rel_56_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
SCNpilot_expt_500_bf_scaffold_318_28
unknown

Not on your lists

23148..23276
DNA (129bp) protein (43aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_318_29
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23258..23389
DNA (132bp) protein (44aa)
Tax=RBG_16_Gammaproteobacteria_62_13__curated
SCNpilot_expt_500_bf_scaffold_318_30
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23553..23780
DNA (228bp) protein (76aa)
Uncharacterized protein id=1351596 bin=GWE1_T_denit_62_9 species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
rhodanese-like protein
Tax=GWE1_Thiobacillus_62_9_curated
Displaying items 1-30 of 63 in total

View Taxonomy