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SCNpilot_expt_500_bf_scaffold_851

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_851_1
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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176..754
DNA (579bp) protein (193aa)
Invertase recombinase-like protein n=1 Tax=Xanthomonas arboricola pv. pruni str. CFBP 5530 RepID=G4U4T1_9XANT rbh
Invertase recombinase-like protein {ECO:0000313|EMBL:CCC18701.1}; TaxID=1045865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas arboricola pv. pruni str. CFBP 5530.;"
site-specific recombinase, DNA invertase Pin
SCNpilot_expt_500_bf_scaffold_851_2
Xanthomonas citri, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1061..2293
DNA (1233bp) protein (411aa)
Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}; EC=2.1.1.37 {ECO:0000256|RuleBase:RU000417};; TaxID=434928 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas citri pv. citri.;"
pliMCI; DNA (cytosine-5)-methyltransferase PliMCI; K00558 DNA (cytosine-5-)-methyltransferase [EC:2.1.1.37] rbh
Cytosine-specific methyltransferase n=1 Tax=Xanthomonas axonopodis pv. punicae str. LMG 859 RepID=H1XMQ9_9XANT rbh
SCNpilot_expt_500_bf_scaffold_851_3
Xanthomonas citri, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2293..3195
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Cronobacter sakazakii (strain ATCC BAA-894) RepID=A7MRC6_CROS8 rbh
Uncharacterized protein {ECO:0000313|EMBL:CEH52152.1}; TaxID=434928 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas citri pv. citri.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_851_4
Xanthomonas citri, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3212..3403)
DNA (192bp) protein (64aa)
Plasmid-like protein n=1 Tax=Xanthomonas axonopodis pv. malvacearum str. GSPB1386 RepID=K8FU84_9XANT
Plasmid-like protein {ECO:0000313|EMBL:CEL42668.1}; TaxID=434928 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas citri pv. citri.;"
plasmid-like protein
SCNpilot_expt_500_bf_scaffold_851_5
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3416..4114)
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Xanthomonas arboricola pv. pruni str. CFBP 5530 RepID=G4U4T0_9XANT rbh
Uncharacterized protein {ECO:0000313|EMBL:GAE52560.1}; TaxID=1414836 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas arboricola pv. pruni str. MAFF 311562.;"
SCNpilot_expt_500_bf_scaffold_851_6
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4131..4346)
DNA (216bp) protein (72aa)
Plasmid partition protein ParB, truncated n=1 Tax=Xanthomonas arboricola pv. pruni str. CFBP 5530 RepID=G4U4S9_9XANT
Plasmid partition protein ParB, truncated {ECO:0000313|EMBL:GAE52559.1}; TaxID=1414836 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas arboricola pv. pruni str. MAFF 311562.;"
plasmid partition protein ParB, truncated
SCNpilot_expt_500_bf_scaffold_851_7
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4359..4988)
DNA (630bp) protein (210aa)
Plasmid partitioning protein n=1 Tax=Xanthomonas arboricola pv. pruni str. CFBP 5530 RepID=G4U4S8_9XANT rbh
Plasmid partitioning protein {ECO:0000313|EMBL:CCC18698.1}; TaxID=1045865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas arboricola pv. pruni str. CFBP 5530.;"
ParaA family ATPase; K03496 chromosome partitioning protein rbh
SCNpilot_expt_500_bf_scaffold_851_8
Pseudomonas sp. MRSN12121, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5147..7531)
DNA (2385bp) protein (795aa)
Relaxase/mobilization protein n=1 Tax=Xanthomonas arboricola pv. pruni str. CFBP 5530 RepID=G4U4S7_9XANT rbh
Plasmid, complete sequence {ECO:0000313|EMBL:AJO81912.1}; TaxID=1611770 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. MRSN12121.;"
relaxase/mobilization nuclease family protein rbh
SCNpilot_expt_500_bf_scaffold_851_9
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7521..7955)
DNA (435bp) protein (145aa)
Putative relaxase protein MobC n=1 Tax=Xanthomonas arboricola pv. pruni str. CFBP 5530 RepID=G4U4S6_9XANT
Uncharacterized protein {ECO:0000313|EMBL:GAE48495.1}; TaxID=1414836 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas arboricola pv. pruni str. MAFF 311562.;"
mobilization protein
SCNpilot_expt_500_bf_scaffold_851_10
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7945..8850)
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Coprococcus sp. HPP0074 RepID=S2Y3I8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD59073.1}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_851_11
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9276..9704
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Xanthomonas arboricola pv. pruni str. CFBP 5530 RepID=G4U4S5_9XANT
Uncharacterized protein {ECO:0000313|EMBL:GAE48496.1}; TaxID=1414836 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas arboricola pv. pruni str. MAFF 311562.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_851_12
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9710..10414
DNA (705bp) protein (235aa)
Putative plasmid stable inheritance protein n=1 Tax=Xanthomonas arboricola pv. pruni str. CFBP 5530 RepID=G4U4S4_9XANT rbh
Plasmid stability protein StbB {ECO:0000313|EMBL:GAE48497.1}; TaxID=1414836 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas arboricola pv. pruni str. MAFF 311562.;"
stbB_1; plasmid stability protein StbB rbh
SCNpilot_expt_500_bf_scaffold_851_13
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10424..10978
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Xanthomonas arboricola pv. pruni str. CFBP 5530 RepID=G4U4S3_9XANT rbh
Uncharacterized protein {ECO:0000313|EMBL:CCC18693.1}; TaxID=1045865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas arboricola pv. pruni str. CFBP 5530.;"
SCNpilot_expt_500_bf_scaffold_851_14
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10975..12582
DNA (1608bp) protein (536aa)
TraD protein n=1 Tax=Xanthomonas arboricola pv. pruni str. CFBP 5530 RepID=G4U4S2_9XANT rbh
TraD protein {ECO:0000313|EMBL:CCC18692.1}; TaxID=1045865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas arboricola pv. pruni str. CFBP 5530.;"
trwB; Type IV secretion system protein rbh
SCNpilot_expt_500_bf_scaffold_851_15
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13131..13868
DNA (738bp) protein (246aa)
Type IV secretion system protein virB5 n=1 Tax=Xanthomonas translucens pv. translucens DSM 18974 RepID=L0T116_XANCT rbh
Minor pilin of type IV secretion complex, VirB5 {ECO:0000313|EMBL:CDM24339.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
plasmid-related exported protein
SCNpilot_expt_500_bf_scaffold_851_16
Bordetella avium, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13880..14374
DNA (495bp) protein (165aa)
Putative plasmid-related protein n=1 Tax=Bordetella avium (strain 197N) RepID=Q2KZE3_BORA1
plasmid-like protein
Putative plasmid-related protein {ECO:0000313|EMBL:CAJ47978.1}; TaxID=360910 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella avium (strain 197N).;"
SCNpilot_expt_500_bf_scaffold_851_17
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14371..14637
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Xanthomonas translucens pv. translucens DSM 18974 RepID=L0T4E6_XANCT
Uncharacterized protein {ECO:0000313|EMBL:CCP42018.1}; TaxID=1261556 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens pv. translucens DSM 18974.;"
plasmid-related lipoprotein
SCNpilot_expt_500_bf_scaffold_851_18
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14640..15725
DNA (1086bp) protein (362aa)
Uncharacterized protein n=1 Tax=Xanthomonas translucens pv. translucens DSM 18974 RepID=L0T314_XANCT rbh
Inner membrane protein of type IV secretion of T-DNA complex, VirB6 {ECO:0000313|EMBL:CDM24336.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
TraH protein; K03201 type IV secretion system protein VirB6
SCNpilot_expt_500_bf_scaffold_851_19
Xanthomonas oryzae, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15722..15883
DNA (162bp) protein (54aa)
Uncharacterized protein n=1 Tax=Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85) RepID=Q05HP1_XANOR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ89869.1}; TaxID=291331 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85).;"
SCNpilot_expt_500_bf_scaffold_851_20
Pseudomonas sp. MRSN12121, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17611..17709)
DNA (99bp) protein (33aa)
Plasmid replication protein RepA1 n=1 Tax=Xanthomonas arboricola pv. pruni str. CFBP 5530 RepID=G4U4P2_9XANT
Plasmid, complete sequence {ECO:0000313|EMBL:AJO81918.1}; TaxID=1611770 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. MRSN12121.;"
Displaying 20 items

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