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SCNpilot_expt_500_bf_scaffold_858

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_858_1
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(1..429)
DNA (429bp) protein (143aa)
Regulatory protein MarR n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E996_9MICO
Regulatory protein MarR {ECO:0000313|EMBL:EIC06490.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
putative MarR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_858_2
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

495..1343
DNA (849bp) protein (283aa)
Uncharacterized protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E997_9MICO rbh
ABC transporter permease {ECO:0000313|EMBL:EXJ51412.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
hypothetical protein; K15269 probable blue pigment (indigoidine) exporter rbh
SCNpilot_expt_500_bf_scaffold_858_3
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1363..3510)
DNA (2148bp) protein (716aa)
4-alpha-glucanotransferase {ECO:0000256|RuleBase:RU361207}; EC=2.4.1.25 {ECO:0000256|RuleBase:RU361207};; Amylomaltase {ECO:0000256|RuleBase:RU361207}; Disproportionating enzyme {ECO:0000256|RuleBase:RU361207}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
4-alpha-glucanotransferase (EC:2.4.1.25); K00705 4-alpha-glucanotransferase [EC:2.4.1.25] rbh
4-alpha-glucanotransferase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E998_9MICO
SCNpilot_expt_500_bf_scaffold_858_4
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(3755..5092)
DNA (1338bp) protein (446aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3BB81_9MICO rbh
Uncharacterized protein {ECO:0000313|EMBL:EPD85869.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
transcriptional activator of acetoin/glycerol metabolism
SCNpilot_expt_500_bf_scaffold_858_5
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5221..6663)
DNA (1443bp) protein (481aa)
pcnB; tRNA nucleotidyltransferase/poly(A) polymerase; K00970 poly(A) polymerase [EC:2.7.7.19]
CCA tRNA nucleotidyltransferase n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A9M5_9MICO
RNA nucleotidyltransferase {ECO:0000313|EMBL:KIC57953.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
SCNpilot_expt_500_bf_scaffold_858_6
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6727..8232)
DNA (1506bp) protein (502aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AUS9_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EPD85867.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
methylase of polypeptide chain release factors
SCNpilot_expt_500_bf_scaffold_858_7
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8342..10567
DNA (2226bp) protein (742aa)
Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E9A2_9MICO rbh
Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component {ECO:0000313|EMBL:EIC06496.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component
SCNpilot_expt_500_bf_scaffold_858_8
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10560..12173
DNA (1614bp) protein (538aa)
Integral membrane protein MviN n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E9A3_9MICO
Integral membrane protein MviN {ECO:0000313|EMBL:EXJ51407.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
hypothetical protein, virulence factor; K03980 virulence factor
SCNpilot_expt_500_bf_scaffold_858_9
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12285..13265
DNA (981bp) protein (327aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
trxB; thioredoxin reductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9]
Thioredoxin reductase n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3BB79_9MICO
SCNpilot_expt_500_bf_scaffold_858_10
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13373..13696
DNA (324bp) protein (108aa)
Thioredoxin n=2 Tax=Microbacterium RepID=H8E9A5_9MICO
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
trxA; thiol-disulfide isomerase and thioredoxins; K03671 thioredoxin 1
SCNpilot_expt_500_bf_scaffold_858_11
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13755..14108)
DNA (354bp) protein (118aa)
Tryptophan synthase alpha chain n=2 Tax=Microbacterium RepID=H8E9A6_9MICO
Tryptophan synthase subunit alpha {ECO:0000313|EMBL:KIC57959.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
tryptophan synthase alpha chain
SCNpilot_expt_500_bf_scaffold_858_12
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14183..15190)
DNA (1008bp) protein (336aa)
ParB family chromosome partitioning protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3ABT9_9MICO rbh
Chromosome partitioning protein ParB {ECO:0000313|EMBL:EXJ51403.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
parB; transcriptional regulator; K03497 chromosome partitioning protein, ParB family
SCNpilot_expt_500_bf_scaffold_858_13
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15190..16122)
DNA (933bp) protein (311aa)
Cobyrinic acid ac-diamide synthase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E9A8_9MICO rbh
Cobyrinic acid ac-diamide synthase {ECO:0000313|EMBL:EIC06502.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
parA; ATPase; K03496 chromosome partitioning protein
SCNpilot_expt_500_bf_scaffold_858_14
RIFOXYD12_FULL_Chloroflexi_57_15_curated, Chloroflexi, Bacteria

Not on your lists

comp(16697..16978)
DNA (282bp) protein (94aa)
hypothetical protein n=1 Tax=Hydrogenedentes bacterium JGI 0000039-J10 RepID=UPI000370E9BC
Excinuclease ABC C subunit domain protein
Tax=RIFOXYD12_FULL_Chloroflexi_57_15_curated
SCNpilot_expt_500_bf_scaffold_858_15
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17651..18280)
DNA (630bp) protein (210aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00277524};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
gidB; S-adenosylmethionine-dependent methyltransferase; K03501 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
Ribosomal RNA small subunit methyltransferase G n=2 Tax=Microbacterium RepID=H8E9A9_9MICO
SCNpilot_expt_500_bf_scaffold_858_16
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18303..18809)
DNA (507bp) protein (169aa)
Single-stranded nucleic acid binding R3H domain-containing protein n=2 Tax=Microbacterium RepID=H8E9B0_9MICO
DNA-binding protein {ECO:0000313|EMBL:EXJ51400.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
RNA-binding protein; K06346 spoIIIJ-associated protein
SCNpilot_expt_500_bf_scaffold_858_17
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18824..19297)
DNA (474bp) protein (158aa)
Membrane protein insertase, YidC/Oxa1 family n=2 Tax=Microbacterium RepID=H8E9B1_9MICO
Membrane protein insertase, YidC/Oxa1 family {ECO:0000313|EMBL:EIC06505.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
preprotein translocase subunit YidC; K03217 preprotein translocase subunit YidC
SCNpilot_expt_500_bf_scaffold_858_18
unknown

Not on your lists

19672..19872
DNA (201bp) protein (67aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_858_19
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19890..20276)
DNA (387bp) protein (129aa)
Putative membrane protein insertion efficiency factor n=2 Tax=Microbacterium RepID=H8E9B2_9MICO
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
hypothetical protein; K08998 hypothetical protein
SCNpilot_expt_500_bf_scaffold_858_20
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20273..20611)
DNA (339bp) protein (113aa)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
RNase P protein component; K03536 ribonuclease P protein component [EC:3.1.26.5]
Ribonuclease P protein component n=1 Tax=Microbacterium sp. TS-1 RepID=U2YVB5_9MICO
SCNpilot_expt_500_bf_scaffold_858_21
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(20622..20759)
DNA (138bp) protein (46aa)
50S ribosomal protein L34 n=2 Tax=Microbacterium RepID=H8E9B4_9MICO
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|SAAS:SAAS00020245}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
rpmH; ribosomal protein L34; K02914 large subunit ribosomal protein L34
SCNpilot_expt_500_bf_scaffold_858_22
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21027..22130
DNA (1104bp) protein (368aa)
Chromosomal replication initiator protein DnaA n=2 Tax=Microbacterium RepID=H8E9B5_9MICO
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
dnaA; ATPase; K02313 chromosomal replication initiator protein
SCNpilot_expt_500_bf_scaffold_858_23
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22091..22423
DNA (333bp) protein (111aa)
Chromosomal replication initiator protein DnaA n=2 Tax=Microbacterium RepID=H8E9B5_9MICO
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
dnaA; ATPase; K02313 chromosomal replication initiator protein
Displaying 23 items

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