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SCNpilot_expt_500_bf_scaffold_1172

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1172_1
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3..1709
DNA (1707bp) protein (569aa)
Heavy metal efflux pump, cobalt-zinc-cadmium n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WK09_9BURK
heavy metal efflux pump, cobalt-zinc-cadmium
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
SCNpilot_expt_500_bf_scaffold_1172_2
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1702..2004
DNA (303bp) protein (101aa)
Putative uncharacterized protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WK08_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHR70980.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
Protein of unknown function (DUF3240)
SCNpilot_expt_500_bf_scaffold_1172_3
Methylibium sp. T29, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2001..3242
DNA (1242bp) protein (414aa)
Outer membrane protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WK07_9BURK
Type I secretion outer membrane protein, TolC family {ECO:0000313|EMBL:EWS56605.1}; TaxID=1430884 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29.;"
outer membrane protein
SCNpilot_expt_500_bf_scaffold_1172_4
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3418..4155
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA022 RepID=U8RDV4_PSEAI
Membrane protein {ECO:0000313|EMBL:ETD48020.1}; TaxID=1431713 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA07.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1172_5
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4178..4816
DNA (639bp) protein (213aa)
Uncharacterized protein n=15 Tax=Pseudomonas aeruginosa RepID=U1FJ24_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:ETD48021.1}; TaxID=1431713 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA07.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1172_6
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4942..5202
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA011 RepID=U8WJA2_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:ETD48022.1}; TaxID=1431713 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA07.;"
SCNpilot_expt_500_bf_scaffold_1172_7
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5426..5617
DNA (192bp) protein (64aa)
LysR family transcriptional regulator n=1 Tax=Pseudomonas aeruginosa WC55 RepID=T5LE95_PSEAI
Transcriptional regulator, LysR family {ECO:0000313|EMBL:CDM23710.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
transcriptional regulator, LysR family
SCNpilot_expt_500_bf_scaffold_1172_8
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5783..6562)
DNA (780bp) protein (260aa)
IstB domain protein ATP-binding protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WAA7_ACISJ
ATP-binding domain-containing protein IstB
IstB domain protein ATP-binding protein {ECO:0000313|EMBL:ABM43182.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_500_bf_scaffold_1172_9
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6555..8066)
DNA (1512bp) protein (504aa)
Integrase, catalytic region n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WAA8_ACISJ rbh
integrase catalytic subunit rbh
Integrase, catalytic region {ECO:0000313|EMBL:ABM43183.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_500_bf_scaffold_1172_10
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8247..9002
DNA (756bp) protein (252aa)
Copper resistance protein B n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WXH0_DELAC
copper resistance protein B domain-containing protein; K07233 copper resistance protein B
Copper resistance protein B domain protein {ECO:0000313|EMBL:ADP14468.1}; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
SCNpilot_expt_500_bf_scaffold_1172_11
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9026..9511
DNA (486bp) protein (162aa)
Uncharacterized protein n=2 Tax=Pseudomonas aeruginosa RepID=U8HDI4_PSEAI
hypothetical protein
Metal-binding protein {ECO:0000313|EMBL:KEH14952.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
SCNpilot_expt_500_bf_scaffold_1172_12
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9543..9827
DNA (285bp) protein (95aa)
Asl7591 protein n=17 Tax=Proteobacteria RepID=I0KLV5_STEMA
Asl7591 protein
Uncharacterized protein {ECO:0000313|EMBL:EFF76940.1}; TaxID=742159 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii ATCC 43553.;"
SCNpilot_expt_500_bf_scaffold_1172_13
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9824..12298
DNA (2475bp) protein (825aa)
heavy metal translocating P-type ATPase; K01533 Cu2+-exporting ATPase [EC:3.6.3.4] rbh
Copper-transporting P-type ATPase n=8 Tax=Proteobacteria RepID=V8EX86_PSEAI rbh
Copper-transporting P-type ATPase {ECO:0000313|EMBL:ETD56470.1}; TaxID=1431713 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA07.;"
SCNpilot_expt_500_bf_scaffold_1172_14
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12436..12822
DNA (387bp) protein (129aa)
Copper resistance protein CopC n=11 Tax=Proteobacteria RepID=A9BPX2_DELAS
copC; copper resistance protein CopC
Copper resistance protein CopC {ECO:0000313|EMBL:ABX33091.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (strain DSM 14801 / SPH-1).;"
SCNpilot_expt_500_bf_scaffold_1172_15
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12827..13480
DNA (654bp) protein (218aa)
Copper resistance D domain protein n=3 Tax=Betaproteobacteria RepID=A9BPX1_DELAS
copper resistance D domain-containing protein; K07245 putative copper resistance protein D
Copper resistance protein CopD {ECO:0000313|EMBL:KEH06928.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
SCNpilot_expt_500_bf_scaffold_1172_16
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13810..14094
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2XZG8_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD44919.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1172_17
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14314..15204
DNA (891bp) protein (297aa)
Transcriptional regulator, LysR family n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T3H8_ACIDE rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EER60974.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
LysR family transcriptional regulator rbh
SCNpilot_expt_500_bf_scaffold_1172_18
unknown

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15279..15497
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1172_19
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15568..16209
DNA (642bp) protein (214aa)
LysR family transcriptional regulator n=2 Tax=Pseudomonas aeruginosa RepID=V8DRY2_PSEAI rbh
LysR family transcriptional regulator rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABM41561.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_500_bf_scaffold_1172_20
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16263..16847)
DNA (585bp) protein (195aa)
Integrase n=3 Tax=Pseudomonas aeruginosa RepID=U5AKF3_PSEAI
phage-related integrase
Uncharacterized protein {ECO:0000313|EMBL:EZP05365.1}; TaxID=1418240 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa BWH054.;"
Displaying 20 items

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