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SCNpilot_expt_500_bf_scaffold_6064

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_6064_1
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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3..1334
DNA (1332bp) protein (444aa)
Valine--tRNA ligase {ECO:0000256|SAAS:SAAS00105779}; EC=6.1.1.9 {ECO:0000256|SAAS:SAAS00105779};; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
valS; valyl-tRNA synthetase; K01873 valyl-tRNA synthetase [EC:6.1.1.9]
Valine--tRNA ligase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E833_9MICO
SCNpilot_expt_500_bf_scaffold_6064_2
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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1336..1584
DNA (249bp) protein (83aa)
Fe-S oxidoreductase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E832_9MICO
Fe-S osidoreductase {ECO:0000313|EMBL:KIC56091.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
Fe-S oxidoreductase
SCNpilot_expt_500_bf_scaffold_6064_3
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(1591..2958)
DNA (1368bp) protein (456aa)
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI00031DC999 rbh
Uncharacterized protein {ECO:0000313|EMBL:EPD83215.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
major facilitator superfamily protein
SCNpilot_expt_500_bf_scaffold_6064_4
unknown

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comp(2955..3077)
DNA (123bp) protein (41aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_6064_5
unknown

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comp(3074..3250)
DNA (177bp) protein (59aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_6064_6
Microbacterium oleivorans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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3774..5201
DNA (1428bp) protein (476aa)
Zn-dependent oligopeptidase; K01284 peptidyl-dipeptidase Dcp [EC:3.4.15.5]
peptidase M3 n=1 Tax=Microbacterium sp. 11MF RepID=UPI000380DDC3
Zn-dependent oligopeptidase {ECO:0000313|EMBL:EZP29574.1}; TaxID=273677 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oleivorans.;"
SCNpilot_expt_500_bf_scaffold_6064_7
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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5207..5740
DNA (534bp) protein (178aa)
Peptidyl-dipeptidase dcp {ECO:0000313|EMBL:KJL35246.1}; EC=3.4.15.5 {ECO:0000313|EMBL:KJL35246.1};; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
Zn-dependent oligopeptidase; K01284 peptidyl-dipeptidase Dcp [EC:3.4.15.5]
peptidase M3 n=1 Tax=Microbacterium sp. 292MF RepID=UPI000371E231
SCNpilot_expt_500_bf_scaffold_6064_8
Mumia flava, Mumia, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(5743..6315)
DNA (573bp) protein (191aa)
Dihydrofolate reductase n=1 Tax=Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74) RepID=D1BF87_SANKS rbh
Deaminase {ECO:0000313|EMBL:KHL12144.1}; TaxID=1348852 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Mumia.;" source="Mumia flava.;"
dihydrofolate reductase rbh
SCNpilot_expt_500_bf_scaffold_6064_9
Microbacterium arborescens, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(6365..7633)
DNA (1269bp) protein (423aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Microbacterium arborescens RepID=Q1X6M9_9MICO
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=33883 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium arborescens.;"
clpX; ATP-dependent protease Clp, ATPase subunit; K03544 ATP-dependent Clp protease ATP-binding subunit ClpX
SCNpilot_expt_500_bf_scaffold_6064_10
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(7778..8245)
DNA (468bp) protein (156aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
clpP2; protease subunit of ATP-dependent Clp protease; K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
ATP-dependent Clp protease proteolytic subunit n=2 Tax=Microbacterium RepID=U2X689_9MICO
SCNpilot_expt_500_bf_scaffold_6064_11
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8445..9053)
DNA (609bp) protein (203aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
clpP; ATP-dependent Clp protease proteolytic subunit (EC:3.4.21.92); K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] rbh
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KFH8_9MICO rbh
SCNpilot_expt_500_bf_scaffold_6064_12
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(9220..10689)
DNA (1470bp) protein (490aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
Trigger factor n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A2G6_9MICO rbh
tig; FKBP-type peptidyl-prolyl cis-trans isomerase; K03545 trigger factor
SCNpilot_expt_500_bf_scaffold_6064_13
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11716..12201
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A9K6_9MICO
DNA-binding protein {ECO:0000313|EMBL:KIC56100.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
DNA-binding ferritin-like protein; K04047 starvation-inducible DNA-binding protein
SCNpilot_expt_500_bf_scaffold_6064_14
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12277..13740)
DNA (1464bp) protein (488aa)
Amidohydrolase 3 n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E4M2_9MICO rbh
Amidohydrolase 3 {ECO:0000313|EMBL:EIC08271.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
metal-dependent hydrolase with the TIM-barrel fold; K07047
SCNpilot_expt_500_bf_scaffold_6064_15
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13779..14294)
DNA (516bp) protein (172aa)
Negative transcriptional regulator n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E4M1_9MICO
Negative transcriptional regulator {ECO:0000313|EMBL:EIC08270.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
transcriptional regulator; K07734 transcriptional regulator
SCNpilot_expt_500_bf_scaffold_6064_16
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14285..14545)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A2G2_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EPD83203.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
transcriptional regulator; K07734 transcriptional regulator
SCNpilot_expt_500_bf_scaffold_6064_17
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14553..15560)
DNA (1008bp) protein (336aa)
formamidopyrimidine-DNA glycosylase; K05522 endonuclease VIII [EC:3.2.2.- 4.2.99.18]
DNA glycosylase/AP lyase, H2TH DNA-binding protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E4M0_9MICO
DNA glycosylase/AP lyase, H2TH DNA-binding protein {ECO:0000313|EMBL:EIC08269.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
SCNpilot_expt_500_bf_scaffold_6064_18
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15560..16096)
DNA (537bp) protein (179aa)
ribose 5-phosphate isomerase RpiB; K01808 ribose 5-phosphate isomerase B [EC:5.3.1.6]
Ribose 5-phosphate isomerase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E4L9_9MICO
Ribose 5-phosphate isomerase {ECO:0000313|EMBL:EIC08268.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
SCNpilot_expt_500_bf_scaffold_6064_19
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16156..16521
DNA (366bp) protein (122aa)
ArsR family transcriptional regulator n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A9K3_9MICO
ArsR family transcriptional regulator {ECO:0000313|EMBL:KIC56104.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
transcriptional regulator, ArsR family; K03892 ArsR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_6064_20
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16518..18209
DNA (1692bp) protein (564aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3B3V8_9MICO rbh
Uncharacterized protein {ECO:0000313|EMBL:EPD83199.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
sulfate permease-like transporter, MFS superfamily; K03321 sulfate permease, SulP family
SCNpilot_expt_500_bf_scaffold_6064_21
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18282..19262
DNA (981bp) protein (327aa)
pepN; aminopeptidase N; K01256 aminopeptidase N [EC:3.4.11.2]
Aminopeptidase N n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A2F9_9MICO
Aminopeptidase N {ECO:0000313|EMBL:EPD83198.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
Displaying 21 items

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