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SCNpilot_expt_500_bf_scaffold_6658

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_6658_1
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(3..620)
DNA (618bp) protein (206aa)
TraJ family protein conjugative transposon n=2 Tax=Bacteroidetes RepID=F0S615_PEDSD
TraJ family protein conjugative transposon
Conjugative transposon TraJ protein {ECO:0000313|EMBL:EFK34040.1}; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
SCNpilot_expt_500_bf_scaffold_6658_2
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(623..1168)
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W0P0_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EFK34039.1}; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_6658_3
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(1219..3723)
DNA (2505bp) protein (835aa)
Type IV secretory pathway VirB4 components-like protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S617_PEDSD rbh
Type IV secretory pathway VirB4 components-like protein {ECO:0000313|EMBL:ADY52120.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
type IV secretory pathway VirB4 components-like protein rbh
SCNpilot_expt_500_bf_scaffold_6658_4
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(3720..4049)
DNA (330bp) protein (110aa)
Conjugative transposon protein TraF n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W0N8_9FLAO
Conjugative transposon protein TraF {ECO:0000313|EMBL:EFK34037.1}; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_6658_5
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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4538..4822
DNA (285bp) protein (95aa)
XRE family transcriptional regulator n=1 Tax=Empedobacter brevis RepID=UPI00035F5A63
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EFK34684.1}; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
helix-turn-helix domain-containing protein
SCNpilot_expt_500_bf_scaffold_6658_6
Flavobacterium psychrophilum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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4857..6938
DNA (2082bp) protein (694aa)
Predicted ATP-dependent endonuclease of the OLD family n=1 Tax=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) RepID=A6GZV7_FLAPJ rbh
hypothetical protein rbh
Predicted ATP-dependent endonuclease of the OLD family {ECO:0000313|EMBL:CAL43630.1}; TaxID=402612 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511).;"
SCNpilot_expt_500_bf_scaffold_6658_7
Flavobacterium psychrophilum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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6920..8851
DNA (1932bp) protein (644aa)
hypothetical protein; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12] rbh
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=402612 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511).;"
Uncharacterized protein n=1 Tax=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) RepID=A6GZV6_FLAPJ rbh
SCNpilot_expt_500_bf_scaffold_6658_8
unknown

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8893..8958
DNA (66bp) protein (22aa)

This feature has no annotations

Displaying 8 items

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