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SCNpilot_expt_500_bf_scaffold_6880

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_6880_1
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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1..921
DNA (921bp) protein (307aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
nucleotidyltransferase/DNA polymerase; K02346 DNA polymerase IV [EC:2.7.7.7]
DNA polymerase IV n=2 Tax=Microbacterium RepID=H8E4I9_9MICO
SCNpilot_expt_500_bf_scaffold_6880_2
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

944..1264
DNA (321bp) protein (107aa)
Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein n=2 Tax=Microbacterium RepID=H8E4J0_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EPD83135.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs
SCNpilot_expt_500_bf_scaffold_6880_3
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1248..1826
DNA (579bp) protein (193aa)
Adenylate kinase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E4J1_9MICO
Adenylate kinase {ECO:0000313|EMBL:EIC08240.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
adenylate kinase
SCNpilot_expt_500_bf_scaffold_6880_4
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1827..2324)
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E4J2_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EIC08241.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_6880_5
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2321..2611)
DNA (291bp) protein (97aa)
ATP-dependent Clp protease adapter protein ClpS n=2 Tax=Microbacterium RepID=H8E4J3_9MICO
ATP-dependent Clp protease adapter protein ClpS {ECO:0000256|HAMAP-Rule:MF_00302}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
hypothetical protein; K06891 ATP-dependent Clp protease adaptor protein ClpS
SCNpilot_expt_500_bf_scaffold_6880_6
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(2611..2961)
DNA (351bp) protein (117aa)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI000365DF19
Possibl zinc metallo-peptidase {ECO:0000313|EMBL:KJL35275.1}; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_6880_7
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(3017..3790)
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ADZ8_GEMAT
Contig_19, whole genome shotgun sequence {ECO:0000313|EMBL:KIP90949.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_6880_8
Microlunatus phosphovorus, Microlunatus, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3787..4752)
DNA (966bp) protein (322aa)
Putative oxidoreductase n=1 Tax=Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1) RepID=F5XPY5_MICPN rbh
putative oxidoreductase rbh
Putative oxidoreductase {ECO:0000313|EMBL:BAK36816.1}; TaxID=1032480 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Microlunatus.;" source="Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 /; NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1).;"
SCNpilot_expt_500_bf_scaffold_6880_9
Microlunatus phosphovorus, Microlunatus, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(4790..5020)
DNA (231bp) protein (77aa)
Putative Xre family DNA binding protein n=1 Tax=Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1) RepID=F5XPY4_MICPN
putative Xre family DNA binding protein; K07729 putative transcriptional regulator
Putative Xre family DNA binding protein {ECO:0000313|EMBL:BAK36815.1}; TaxID=1032480 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Microlunatus.;" source="Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 /; NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1).;"
SCNpilot_expt_500_bf_scaffold_6880_10
Microlunatus phosphovorus, Microlunatus, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5020..5442)
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1) RepID=F5XPY3_MICPN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAK36814.1}; TaxID=1032480 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Microlunatus.;" source="Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 /; NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1).;"
SCNpilot_expt_500_bf_scaffold_6880_11
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5705..6328)
DNA (624bp) protein (208aa)
Oligoribonuclease {ECO:0000256|HAMAP-Rule:MF_00045}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00045};; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
oligoribonuclease; K13288 oligoribonuclease [EC:3.1.-.-]
Oligoribonuclease n=2 Tax=Microbacterium RepID=H8E4J5_9MICO rbh
SCNpilot_expt_500_bf_scaffold_6880_12
GWF2_Tenericutes_57_13_curated, Tenericutes, Bacteria

Not on your lists

6476..7699
DNA (1224bp) protein (408aa)
glycoside hydrolase; K01191 alpha-mannosidase [EC:3.2.1.24] id=7720155 bin=CNBR_ACT species=Paenibacillus sp. genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=CNBR_ACT organism_group=Actinobacteria
glycoside hydrolase; K01191 alpha-mannosidase [EC:3.2.1.24]
Tax=GWF2_Tenericutes_57_13_curated
SCNpilot_expt_500_bf_scaffold_6880_13
Paenibacillus macerans, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

7648..8595
DNA (948bp) protein (316aa)
glycoside hydrolase; K01191 alpha-mannosidase [EC:3.2.1.24] id=7720155 bin=CNBR_ACT species=Paenibacillus sp. genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=CNBR_ACT organism_group=Actinobacteria
glycoside hydrolase family protein; K01191 alpha-mannosidase [EC:3.2.1.24]
Uncharacterized protein {ECO:0000313|EMBL:KFN10426.1}; TaxID=44252 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus macerans (Bacillus macerans).;"
SCNpilot_expt_500_bf_scaffold_6880_14
GWF2_Tenericutes_57_13_curated, Tenericutes, Bacteria

Not on your lists

8538..9296
DNA (759bp) protein (253aa)
alpha-mannosidase (EC:3.2.1.24); K01191 alpha-mannosidase [EC:3.2.1.24]
hypothetical protein n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI000375A24D
Tax=GWF2_Tenericutes_57_13_curated
SCNpilot_expt_500_bf_scaffold_6880_15
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9362..9571
DNA (210bp) protein (70aa)
Methyltransferase n=2 Tax=Microbacterium RepID=H8E4J9_9MICO
Methyltransferase {ECO:0000313|EMBL:EIC08248.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
methyltransferase
SCNpilot_expt_500_bf_scaffold_6880_16
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9558..10205)
DNA (648bp) protein (216aa)
Uncharacterized protein n=2 Tax=Microbacterium RepID=H8E4K0_9MICO rbh
Membrane protein {ECO:0000313|EMBL:EXJ52778.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_6880_17
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11168..11557
DNA (390bp) protein (130aa)
Regulatory protein GntR HTH n=2 Tax=Microbacterium RepID=H8E4K1_9MICO
Regulatory protein GntR HTH {ECO:0000313|EMBL:EIC08250.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
MocR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_6880_18
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11565..11810)
DNA (246bp) protein (82aa)
DNA mismatch repair enzyme n=2 Tax=Microbacterium RepID=H8E4K2_9MICO
DNA mismatch repair protein {ECO:0000313|EMBL:KIC56118.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
DNA mismatch repair enzyme
SCNpilot_expt_500_bf_scaffold_6880_19
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12045..12557
DNA (513bp) protein (171aa)
Single-stranded DNA-binding protein n=2 Tax=Microbacterium RepID=H8E4K3_9MICO
Single-stranded DNA-binding protein {ECO:0000256|RuleBase:RU000524}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
single stranded DNA-binding protein; K03111 single-strand DNA-binding protein
SCNpilot_expt_500_bf_scaffold_6880_20
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

12603..13082
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI00036C993F
hypothetical protein
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
SCNpilot_expt_500_bf_scaffold_6880_21
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13121..14719
DNA (1599bp) protein (533aa)
ATP-binding cassette protein, ChvD family n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E4K5_9MICO rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KIC56115.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
ATPase components of ABC transporters with duplicated ATPase domains
SCNpilot_expt_500_bf_scaffold_6880_22
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14716..15195
DNA (480bp) protein (160aa)
thioesterase; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-]
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A2E5_9MICO
4-hydroxybenzoyl-CoA thioesterase {ECO:0000313|EMBL:KIC56114.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
SCNpilot_expt_500_bf_scaffold_6880_23
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15182..15874)
DNA (693bp) protein (231aa)
tesB; acyl-CoA thioesterase; K10805 acyl-CoA thioesterase II [EC:3.1.2.-]
Acyl-CoA thioesterase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E4K7_9MICO
Acyl-CoA thioesterase {ECO:0000313|EMBL:EIC08256.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
SCNpilot_expt_500_bf_scaffold_6880_24
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16465..16740
DNA (276bp) protein (92aa)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI0003642BDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAJ76278.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_expt_500_bf_scaffold_6880_25
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16768..17271
DNA (504bp) protein (168aa)
transporter n=1 Tax=Agromyces italicus RepID=UPI0003B3D28B
Magnesium transport protein CorA {ECO:0000256|RuleBase:RU362010}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
magnesium and cobalt transport protein CorA; K03284 magnesium transporter
SCNpilot_expt_500_bf_scaffold_6880_26
unknown

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comp(17279..17368)
DNA (90bp) protein (30aa)

This feature has no annotations

Displaying 26 items

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