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SCNpilot_expt_500_bf_scaffold_6956

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_6956_1
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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507..1625
DNA (1119bp) protein (373aa)
Anhydro-N-acetylmuramic acid kinase {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085893}; EC=2.7.1.170 {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085888};; AnhMurNAc kinase {ECO:0000256|HAMAP-Rule:MF_01270}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
anmK; anhydro-N-acetylmuramic acid kinase; K09001 anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170] rbh
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00035F480E rbh
SCNpilot_expt_500_bf_scaffold_6956_2
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1622..2503
DNA (882bp) protein (294aa)
ATPase n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000381FB5D
Putative N-acetylglucosamine kinase {ECO:0000313|EMBL:AJA11653.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
BadF/BadG/BcrA/BcrD type ATPase
SCNpilot_expt_500_bf_scaffold_6956_3
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2475..3491)
DNA (1017bp) protein (339aa)
Beta-N-acetylglucosaminidase n=1 Tax=Novosphingobium sp. AP12 RepID=J2HH69_9SPHN rbh
Beta-N-acetylglucosaminidase {ECO:0000313|EMBL:EJL34998.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
hyaluronidase rbh
SCNpilot_expt_500_bf_scaffold_6956_4
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3488..4624)
DNA (1137bp) protein (379aa)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
N-acetylglucosamine-6-phosphate deacetylase (EC:3.5.1.25); K01443 N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
N-acetylglucosamine-6-phosphate deacetylase n=1 Tax=alpha proteobacterium JLT2015 RepID=M2U1K4_9PROT rbh
SCNpilot_expt_500_bf_scaffold_6956_5
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4621..5634)
DNA (1014bp) protein (338aa)
Glutamine-fructose-6-phosphate transaminase (Isomerizing) {ECO:0000313|EMBL:AJA09706.1}; EC=2.6.1.16 {ECO:0000313|EMBL:AJA09706.1};; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
Glutamine-fructose-6-phosphate transaminase (Isomerizing) n=1 Tax=Sphingomonas sp. MM-1 RepID=M4RWV9_9SPHN
glutamine-fructose-6-phosphate transaminase (isomerizing)
SCNpilot_expt_500_bf_scaffold_6956_6
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5724..7274
DNA (1551bp) protein (517aa)
FAD linked oxidase domain-containing protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZBU2_9SPHN
FAD linked oxidase domain-containing protein {ECO:0000313|EMBL:KGB58434.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
D-lactate dehydrogenase
SCNpilot_expt_500_bf_scaffold_6956_7
unknown

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7306..7557
DNA (252bp) protein (84aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_6956_8
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8081..8815)
DNA (735bp) protein (245aa)
HTH-type transcriptional repressor n=1 Tax=Azospirillum amazonense Y2 RepID=G1XYE8_9PROT
HTH-type transcriptional repressor {ECO:0000313|EMBL:EGY01708.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_6956_9
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8821..9717)
DNA (897bp) protein (299aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NHU2_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EAT10289.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
sugar isomerase (SIS)
SCNpilot_expt_500_bf_scaffold_6956_10
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9710..11272)
DNA (1563bp) protein (521aa)
hypothetical protein n=1 Tax=Robiginitomaculum antarcticum RepID=UPI000372ED6D rbh
Na+/solute symporter {ECO:0000313|EMBL:AJA09710.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
Na+/solute symporter rbh
SCNpilot_expt_500_bf_scaffold_6956_11
unknown

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comp(11394..11462)
DNA (69bp) protein (23aa)

This feature has no annotations

Displaying 11 items

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