ggKbase home page

SCNpilot_expt_500_bf_scaffold_8525

Search features with annotation key words

Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_8525_1
unknown

Not on your lists

3..80
DNA (78bp) protein (26aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_8525_2
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(289..1128)
DNA (840bp) protein (280aa)
Elongation factor Ts n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0MUL4_9SPHI rbh
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
elongation factor Ts; K02357 elongation factor Ts rbh
SCNpilot_expt_500_bf_scaffold_8525_3
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1258..2451)
DNA (1194bp) protein (398aa)
Aminotransferase class-III n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PFU0_CHIPD
class III aminotransferase
Aminotransferase class-III {ECO:0000313|EMBL:ACU57923.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_500_bf_scaffold_8525_4
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(2479..3201)
DNA (723bp) protein (241aa)
Nucleotidyl transferase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TIQ2_NIAKG
nucleotidyltransferase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_500_bf_scaffold_8525_5
RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated, Bacteroidetes, Bacteria

Not on your lists

3355..4002
DNA (648bp) protein (216aa)
Uncharacterized protein id=3963156 bin=GWF2_Bacteroidetes_41_31 species=Bacteroides cellulosilyticus genus=Bacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated
SCNpilot_expt_500_bf_scaffold_8525_6
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

4006..4866
DNA (861bp) protein (287aa)
Rhomboid family protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PK17_CHIPD
rhomboid family protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_500_bf_scaffold_8525_7
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5069..6019
DNA (951bp) protein (317aa)
Endonuclease/exonuclease/phosphatase n=1 Tax=Niabella soli DSM 19437 RepID=H1NT12_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:KIC95179.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
endonuclease/exonuclease/phosphatase
SCNpilot_expt_500_bf_scaffold_8525_8
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6024..6530)
DNA (507bp) protein (169aa)
thymidine kinase; K00857 thymidine kinase [EC:2.7.1.21]
Thymidine kinase {ECO:0000256|HAMAP-Rule:MF_00124, ECO:0000256|RuleBase:RU000544}; EC=2.7.1.21 {ECO:0000256|HAMAP-Rule:MF_00124, ECO:0000256|RuleBase:RU000544};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Thymidine kinase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PSX5_CHIPD
SCNpilot_expt_500_bf_scaffold_8525_9
Mangrovimonas yunxiaonensis, Mangrovimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

6603..7274
DNA (672bp) protein (224aa)
Polysaccharide deacetylase (CE4) n=1 Tax=Formosa agariphila KMM 3901 RepID=T2KHP1_9FLAO
Polysaccharide deacetylase {ECO:0000313|EMBL:KFB01908.1}; TaxID=1197477 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Mangrovimonas.;" source="Mangrovimonas yunxiaonensis.;"
putative xylanase/chitin deacetylase
SCNpilot_expt_500_bf_scaffold_8525_10
CG_Bacteroid_01, Bacteroidetes, Bacteria

Not on your lists

comp(7334..8092)
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7F7_NIAKG
hypothetical protein
Tax=CG_Bacteroid_01
Displaying 10 items

View Taxonomy