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SCNpilot_expt_500_bf_scaffold_3423

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3423_1
Microbacterium sp. SUBG005, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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2..226
DNA (225bp) protein (75aa)
tRNA/rRNA methyltransferase (SpoU) n=2 Tax=Microbacterium RepID=H8E2D9_9MICO
RNA methyltransferase {ECO:0000313|EMBL:KEP76342.1}; TaxID=1504156 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SUBG005.;"
rRNA methylase; K03437 RNA methyltransferase, TrmH family
SCNpilot_expt_500_bf_scaffold_3423_2
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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642..1028
DNA (387bp) protein (129aa)
gluA; glutamate transport ATP-binding protein; K10008 glutamate transport system ATP-binding protein [EC:3.6.3.-]
Ectoine/hydroxyectoine ABC transporter,ATP-binding protein n=1 Tax=Microbacterium sp. TS-1 RepID=U2X7T7_9MICO
Ectoine/hydroxyectoine ABC transporter,ATP-binding protein {ECO:0000313|EMBL:GAD33496.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
SCNpilot_expt_500_bf_scaffold_3423_3
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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1087..1770
DNA (684bp) protein (228aa)
ABC transporter substrate-binding protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI000379A173
ABC transporter substrate-binding protein {ECO:0000313|EMBL:EXJ51995.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
amino acid ABC transporter periplasmic protein; K10005 glutamate transport system substrate-binding protein
SCNpilot_expt_500_bf_scaffold_3423_4
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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1763..1945
DNA (183bp) protein (61aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI00030A9FDF
ABC transporter glutamine-binding protein GlnH {ECO:0000313|EMBL:KJL23730.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
amino acid ABC transporter periplasmic protein; K10005 glutamate transport system substrate-binding protein
SCNpilot_expt_500_bf_scaffold_3423_5
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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2027..2677
DNA (651bp) protein (217aa)
amino acid ABC transporter permease n=1 Tax=Microbacterium sp. B19 RepID=UPI000344B2F2 rbh
Putative glutamine ABC transporter permease protein GlnP {ECO:0000313|EMBL:KJL36363.1}; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
amino acid ABC transporter permease; K10006 glutamate transport system permease protein
SCNpilot_expt_500_bf_scaffold_3423_6
Microbacterium oleivorans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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2674..4641
DNA (1968bp) protein (656aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=273677 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oleivorans.;"
pheS; phenylalanyl-tRNA synthetase alpha subunit; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
phenylalanyl-tRNA synthetase subunit alpha n=1 Tax=Microbacterium paraoxydans RepID=UPI000376CC25
SCNpilot_expt_500_bf_scaffold_3423_7
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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4641..7175
DNA (2535bp) protein (845aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
pheT; phenylalanyl-tRNA synthetase beta subunit; K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
Phenylalanine--tRNA ligase beta subunit n=2 Tax=Microbacterium RepID=H8E2E5_9MICO rbh
SCNpilot_expt_500_bf_scaffold_3423_8
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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7221..7991
DNA (771bp) protein (257aa)
ABC transporter related protein n=2 Tax=Microbacterium RepID=H8E2E7_9MICO
ABC transporter related protein {ECO:0000313|EMBL:EIC09317.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
multidrug ABC transporter ATPase; K01990 ABC-2 type transport system ATP-binding protein
SCNpilot_expt_500_bf_scaffold_3423_9
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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7973..9223
DNA (1251bp) protein (417aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AF09_9MICO
Uncharacterized protein {ECO:0000313|EMBL:KIC56494.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
hypothetical protein; K01992 ABC-2 type transport system permease protein
SCNpilot_expt_500_bf_scaffold_3423_10
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9180..9497
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AF09_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EPD86846.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
hypothetical protein; K01992 ABC-2 type transport system permease protein
SCNpilot_expt_500_bf_scaffold_3423_11
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9502..10485
DNA (984bp) protein (328aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E2E9_9MICO rbh
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:EIC09319.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
reductase rbh
SCNpilot_expt_500_bf_scaffold_3423_12
unknown

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10504..11001
DNA (498bp) protein (166aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3423_13
Microbacterium oleivorans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11110..12156
DNA (1047bp) protein (349aa)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_00150};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393};; N-acetyl-glutamate semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00150}; TaxID=273677 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oleivorans.;"
argC; acetylglutamate semialdehyde dehydrogenase; K00145 N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Microbacterium RepID=UPI0003707AFC rbh
SCNpilot_expt_500_bf_scaffold_3423_14
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12153..13310
DNA (1158bp) protein (386aa)
argJ; N-acetylglutamate synthase; K00620 glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
Arginine biosynthesis bifunctional protein ArgJ n=1 Tax=Microbacterium sp. TS-1 RepID=U2XJZ0_9MICO rbh
Arginine biosynthesis bifunctional protein ArgJ {ECO:0000256|HAMAP-Rule:MF_01106}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
SCNpilot_expt_500_bf_scaffold_3423_15
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13307..14212
DNA (906bp) protein (302aa)
Acetylglutamate kinase {ECO:0000256|HAMAP-Rule:MF_00082, ECO:0000256|SAAS:SAAS00245375}; EC=2.7.2.8 {ECO:0000256|HAMAP-Rule:MF_00082, ECO:0000256|SAAS:SAAS00245383};; N-acetyl-L-glutamate 5-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00082}; NAG kinase {ECO:0000256|HAMAP-Rule:MF_00082}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
argB; acetylglutamate kinase; K00930 acetylglutamate kinase [EC:2.7.2.8]
Acetylglutamate kinase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E2F2_9MICO
SCNpilot_expt_500_bf_scaffold_3423_16
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14209..15459
DNA (1251bp) protein (417aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
argD; ornithine/acetylornithine aminotransferase; K00818 acetylornithine aminotransferase [EC:2.6.1.11]
Acetylornithine aminotransferase n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AEZ9_9MICO
SCNpilot_expt_500_bf_scaffold_3423_17
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15456..16319
DNA (864bp) protein (288aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
argF; ornithine carbamoyltransferase; K00611 ornithine carbamoyltransferase [EC:2.1.3.3]
Ornithine carbamoyltransferase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E2F4_9MICO
Displaying 17 items

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