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SCNpilot_expt_500_bf_scaffold_3747

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3747_1
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(1..552)
DNA (552bp) protein (184aa)
ATP-dependent DNA ligase; K01971 DNA ligase (ATP) [EC:6.5.1.1]
DNA ligase D n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3ABM3_9MICO
DNA ligase D {ECO:0000313|EMBL:EPD84035.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
SCNpilot_expt_500_bf_scaffold_3747_2
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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898..1707
DNA (810bp) protein (270aa)
Probable DNA repair protein OR221_0330 n=2 Tax=Microbacterium RepID=H8E9Q0_9MICO rbh
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
hypothetical protein; K10979 DNA end-binding protein Ku
SCNpilot_expt_500_bf_scaffold_3747_3
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(1713..2471)
DNA (759bp) protein (253aa)
SNARE associated protein n=2 Tax=Microbacterium RepID=H8E9Q1_9MICO
Membrane protein {ECO:0000313|EMBL:KIC57694.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
hypothetical protein; K03975 membrane-associated protein
SCNpilot_expt_500_bf_scaffold_3747_4
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(2494..3390)
DNA (897bp) protein (299aa)
Formate/nitrite transporter n=2 Tax=Microbacterium RepID=H8E9Q4_9MICO
Nitrite transporter NirC {ECO:0000313|EMBL:EXJ51533.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
formate/nitrite transporter family protein; K02598 nitrite transporter NirC
SCNpilot_expt_500_bf_scaffold_3747_5
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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3481..4059
DNA (579bp) protein (193aa)
Type II secretion system protein E n=2 Tax=Microbacterium RepID=H8E9Q6_9MICO
Type II secretion system protein E {ECO:0000313|EMBL:EIC06339.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
putative ATPase, type II/type IV pathway secretion protein; K02283 pilus assembly protein CpaF
SCNpilot_expt_500_bf_scaffold_3747_6
Nocardia seriolae, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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4074..5276
DNA (1203bp) protein (401aa)
hypothetical protein n=1 Tax=Streptomyces RepID=UPI00035CC06A rbh
Uncharacterized protein {ECO:0000313|EMBL:GAM51397.1}; TaxID=37332 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia seriolae.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3747_7
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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5387..6472
DNA (1086bp) protein (362aa)
hypothetical protein n=1 Tax=Kocuria rhizophila RepID=UPI0003822DAA rbh
Uncharacterized protein {ECO:0000313|EMBL:CDK01601.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
SCNpilot_expt_500_bf_scaffold_3747_8
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(6483..6986)
DNA (504bp) protein (168aa)
Uncharacterized protein {ECO:0000313|EMBL:KJL37389.1}; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
SCNpilot_expt_500_bf_scaffold_3747_9
unknown

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7196..7393
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3747_10
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

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7390..8007
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8X8I3_NAKMY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV79038.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
SCNpilot_expt_500_bf_scaffold_3747_11
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

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comp(7973..9082)
DNA (1110bp) protein (370aa)
Uncharacterized protein n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8X8I4_NAKMY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV79039.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
SCNpilot_expt_500_bf_scaffold_3747_12
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

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comp(9075..9404)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8X8I5_NAKMY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV79040.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
Displaying 12 items

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