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SCNpilot_expt_500_bf_scaffold_3911

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3911_1
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(1..783)
DNA (783bp) protein (261aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GFG4_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB24188.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3911_2
unknown

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1014..1304
DNA (291bp) protein (97aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3911_3
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(2485..3657)
DNA (1173bp) protein (391aa)
Ribonuclease BN n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E1D5_9MICO
Ribonuclease BN {ECO:0000313|EMBL:KIC59611.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
hypothetical protein; K07058 membrane protein
SCNpilot_expt_500_bf_scaffold_3911_4
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(3713..4468)
DNA (756bp) protein (252aa)
Succinate dehydrogenase iron-sulfur subunit {ECO:0000256|RuleBase:RU361237}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU361237};; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
sdhB; succinate dehydrogenase/fumarate reductase, Fe-S protein subunit; K00240 succinate dehydrogenase iron-sulfur subunit [EC:1.3.99.1]
Succinate dehydrogenase and fumarate reductase iron-sulfur protein n=2 Tax=Microbacterium RepID=H8E1D6_9MICO rbh
SCNpilot_expt_500_bf_scaffold_3911_5
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(4468..5961)
DNA (1494bp) protein (498aa)
Succinate dehydrogenase flavoprotein subunit {ECO:0000256|RuleBase:RU362051}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU362051};; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
sdhA; succinate dehydrogenase/fumarate reductase, flavoprotein subunit; K00239 succinate dehydrogenase flavoprotein subunit [EC:1.3.99.1]
Succinate dehydrogenase, flavoprotein subunit n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AXL9_9MICO
SCNpilot_expt_500_bf_scaffold_3911_6
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(6315..6782)
DNA (468bp) protein (156aa)
Succinate dehydrogenase cytochrome b subunit n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E1D8_9MICO
Succinate dehydrogenase cytochrome b subunit {ECO:0000313|EMBL:EIC08958.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
sdhD; succinate dehydrogenase, hydrophobic anchor subunit; K00242 succinate dehydrogenase membrane anchor subunit
SCNpilot_expt_500_bf_scaffold_3911_7
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(6782..7216)
DNA (435bp) protein (145aa)
Succinate dehydrogenase, cytochrome b556 subunit n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E1D9_9MICO
Succinate dehydrogenase, cytochrome b556 subunit {ECO:0000313|EMBL:EIC08959.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
succinate dehydrogenase/fumarate reductase, cytochrome b subunit; K00241 succinate dehydrogenase cytochrome b556 subunit
SCNpilot_expt_500_bf_scaffold_3911_8
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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7412..8527
DNA (1116bp) protein (372aa)
manC; mannose-1-phosphate guanylyltransferase; K00971 mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3BDS8_9MICO rbh
Mannose-1-phosphate guanylyltransferase {ECO:0000313|EMBL:EXJ53198.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
SCNpilot_expt_500_bf_scaffold_3911_9
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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8681..9835
DNA (1155bp) protein (385aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3ACD2_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EPD86773.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
ABC transporter periplasmic protein; K07335 basic membrane protein A and related proteins
SCNpilot_expt_500_bf_scaffold_3911_10
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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9946..11460
DNA (1515bp) protein (505aa)
putative sugar ABC transporter ATPase; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17]
ABC transporter n=1 Tax=Microbacterium barkeri RepID=UPI00031DE35E rbh
ABC transporter {ECO:0000313|EMBL:EQM78263.1}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
SCNpilot_expt_500_bf_scaffold_3911_11
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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11457..12650
DNA (1194bp) protein (398aa)
ABC-type transporter, integral membrane subunit n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E1E3_9MICO rbh
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:EIC08963.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
transport protein; K02057 simple sugar transport system permease protein
Displaying 11 items

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