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SCNpilot_expt_500_bf_scaffold_3930

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3930_1
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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3..260
DNA (258bp) protein (86aa)
Uncharacterized protein n=2 Tax=Microbacterium RepID=H8E4D4_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EIC08183.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
metal-binding, possibly nucleic acid-binding protein; K07040 uncharacterized protein
SCNpilot_expt_500_bf_scaffold_3930_2
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


263..472
DNA (210bp) protein (70aa)
50S ribosomal protein L32 n=2 Tax=Microbacterium RepID=E8NCX7_MICTS
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
rpmF; 50S ribosomal protein L32; K02911 large subunit ribosomal protein L32
SCNpilot_expt_500_bf_scaffold_3930_3
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

495..1175
DNA (681bp) protein (227aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
rnc; dsRNA-specific ribonuclease; K03685 ribonuclease III [EC:3.1.26.3]
Ribonuclease 3 n=2 Tax=Microbacterium RepID=H8E4D6_9MICO rbh
SCNpilot_expt_500_bf_scaffold_3930_4
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1168..2094
DNA (927bp) protein (309aa)
Formamidopyrimidine-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103, ECO:0000256|SAAS:SAAS00020852}; Short=Fapy-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103};; EC=3.2.2.23 {ECO:0000256|HAMAP-Rule:MF_00103};; DNA-(apurinic or apyrimidinic site) lyase MutM {ECO:0000256|HAMAP-Rule:MF_00103}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
formamidopyrimidine-DNA glycosylase; K10563 formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
hypothetical protein n=1 Tax=Microbacterium sp. 11MF RepID=UPI00037A3ECD rbh
SCNpilot_expt_500_bf_scaffold_3930_5
Leucobacter sp. UCD-THU, Leucobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(2097..2657)
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Leucobacter sp. UCD-THU RepID=UPI0003794DCC
GCN5 family acetyltransferase {ECO:0000313|EMBL:EYT52651.1}; TaxID=1292023 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leucobacter.;" source="Leucobacter sp. UCD-THU.;"
N-acetyltransferase GCN5
SCNpilot_expt_500_bf_scaffold_3930_6
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2872..3741)
DNA (870bp) protein (290aa)
membrane protein n=1 Tax=Microbacterium sp. B19 RepID=UPI0003B3D229
Uncharacterized protein {ECO:0000313|EMBL:KJL17735.1}; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3930_7
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3885..4364)
DNA (480bp) protein (160aa)
GCN5-related N-acetyltransferase n=2 Tax=Microbacterium RepID=H8E4D9_9MICO
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:EIC08188.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
histone acetyltransferase HPA2
SCNpilot_expt_500_bf_scaffold_3930_8
unknown

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comp(5265..5357)
DNA (93bp) protein (31aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3930_9
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5490..8948
DNA (3459bp) protein (1153aa)
Chromosome partition protein Smc n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E4E2_9MICO rbh
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
smc; chromosome segregation ATPase; K03529 chromosome segregation protein
SCNpilot_expt_500_bf_scaffold_3930_10
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9007..9678
DNA (672bp) protein (224aa)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI0003724F6C
Uncharacterized protein {ECO:0000313|EMBL:EIC08192.1}; Flags: Precursor;; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
SCNpilot_expt_500_bf_scaffold_3930_11
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


10254..10553
DNA (300bp) protein (100aa)
Signal recognition particle receptor FtsY n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KHY6_9MICO
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
signal recognition particle receptor
SCNpilot_expt_500_bf_scaffold_3930_12
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10603..11103
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A960_9MICO
Galactose-1-phosphate uridylyltransferase {ECO:0000313|EMBL:KIC56163.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
galactose-1-phosphate uridyltransferase
SCNpilot_expt_500_bf_scaffold_3930_13
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11124..12767)
DNA (1644bp) protein (548aa)
Lipoyl synthase {ECO:0000256|HAMAP-Rule:MF_00206}; EC=2.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00206};; Lip-syn {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoate synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoic acid synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Sulfur insertion protein LipA {ECO:0000256|HAMAP-Rule:MF_00206}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
lipA; lipoate synthase; K03644 lipoic acid synthetase [EC:2.8.1.8]
radical SAM protein n=1 Tax=Microbacterium yannicii RepID=UPI000302C932
SCNpilot_expt_500_bf_scaffold_3930_14
Kribbella flavida, Kribbella, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12856..13551
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) RepID=D2PPX3_KRIFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB32897.1}; TaxID=479435 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Kribbella.;" source="Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399).;"
SCNpilot_expt_500_bf_scaffold_3930_15
Microbacterium sp. SUBG005, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13556..14107
DNA (552bp) protein (184aa)
TetR family transcriptional regulator n=1 Tax=Microbacterium sp. B19 RepID=UPI0003451FD6
Uncharacterized protein {ECO:0000313|EMBL:KEP76260.1}; TaxID=1504156 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SUBG005.;"
transcriptional regulator
SCNpilot_expt_500_bf_scaffold_3930_16
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


14227..15783
DNA (1557bp) protein (519aa)
Signal recognition particle protein n=2 Tax=Microbacterium RepID=H8E4E9_9MICO rbh
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
ffh; signal recognition particle GTPase; K03106 signal recognition particle subunit SRP54
SCNpilot_expt_500_bf_scaffold_3930_17
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15815..16960)
DNA (1146bp) protein (382aa)
Putative glutamate--cysteine ligase 2 {ECO:0000256|HAMAP-Rule:MF_01609}; EC=6.3.2.2 {ECO:0000256|HAMAP-Rule:MF_01609};; Gamma-glutamylcysteine synthetase 2 {ECO:0000256|HAMAP-Rule:MF_01609}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
hypothetical protein; K06048 carboxylate-amine ligase [EC:6.3.-.-]
carboxylate-amine ligase n=1 Tax=Microbacterium yannicii RepID=UPI0002F4CBB2
SCNpilot_expt_500_bf_scaffold_3930_18
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


17156..17584
DNA (429bp) protein (143aa)
30S ribosomal protein S16 n=1 Tax=Microbacterium sp. TS-1 RepID=U2XIN4_9MICO
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
rpsP; ribosomal protein S16; K02959 small subunit ribosomal protein S16
SCNpilot_expt_500_bf_scaffold_3930_19
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17590..17820
DNA (231bp) protein (77aa)
UPF0109 protein MTS1_00423 n=1 Tax=Microbacterium sp. TS-1 RepID=U2YJF6_9MICO
UPF0109 protein MTS1_00423 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
RNA-binding protein; K06960
SCNpilot_expt_500_bf_scaffold_3930_20
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17822..18415
DNA (594bp) protein (198aa)
Ribosome maturation factor RimM n=2 Tax=Microbacterium RepID=H8E4F4_9MICO rbh
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00055369}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
rimM; RimM protein; K02860 16S rRNA processing protein RimM
SCNpilot_expt_500_bf_scaffold_3930_21
Microbacterium oleivorans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18417..18836
DNA (420bp) protein (140aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=273677 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oleivorans.;"
trmD; tRNA-(guanine-N1)-methyltransferase; K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
tRNA (guanine-N1)-methyltransferase n=1 Tax=Microbacterium paraoxydans RepID=UPI00036ED063
Displaying 21 items

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