ggKbase home page

SCNpilot_expt_500_bf_scaffold_15165

Search features with annotation key words

Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_15165_1
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..346
DNA (345bp) protein (115aa)
tuf; elongation factor Tu (EC:3.6.5.3); K02358 elongation factor Tu
elongation factor Tu n=1 Tax=Sphingomonas melonis RepID=UPI000366C44E
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_expt_500_bf_scaffold_15165_2
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


537..845
DNA (309bp) protein (103aa)
30S ribosomal protein S10 n=3 Tax=root RepID=F3X0K1_9SPHN
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
rpsJ; ribosomal protein S10; K02946 small subunit ribosomal protein S10
SCNpilot_expt_500_bf_scaffold_15165_3
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1107..1856
DNA (750bp) protein (250aa)
50S ribosomal protein L3 n=1 Tax=Sphingomonas melonis RepID=UPI00037A6722 rbh
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
rplC; 50S ribosomal protein L3; K02906 large subunit ribosomal protein L3
SCNpilot_expt_500_bf_scaffold_15165_4
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1860..2477
DNA (618bp) protein (206aa)
50S ribosomal protein L4 n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B510EC rbh
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
rplD; 50S ribosomal protein L4
SCNpilot_expt_500_bf_scaffold_15165_5

Not on your lists


2470..2790
DNA (321bp) protein (107aa)
50S ribosomal protein L23 n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B3C902
Ribosomal protein L23 {ECO:0000313|EMBL:AGU12270.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
rplW; 50S ribosomal protein L23
SCNpilot_expt_500_bf_scaffold_15165_6
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2790..3539
DNA (750bp) protein (250aa)
Ribosomal Proteins L2, C-terminal domain n=1 Tax=uncultured organism RepID=T1WC52_9ZZZZ
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
rplB; 50S ribosomal protein L2; K02886 large subunit ribosomal protein L2
SCNpilot_expt_500_bf_scaffold_15165_7
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3579..3857
DNA (279bp) protein (93aa)
30S ribosomal protein S19 n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00036A25EB
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
rpsS; 30S ribosomal protein S19; K02965 small subunit ribosomal protein S19
SCNpilot_expt_500_bf_scaffold_15165_8
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3857..4234
DNA (378bp) protein (126aa)
50S ribosomal protein L22 n=1 Tax=Sphingomonas sp. S17 RepID=F3X0J5_9SPHN
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
rplV; 50S ribosomal protein L22; K02890 large subunit ribosomal protein L22
SCNpilot_expt_500_bf_scaffold_15165_9
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4234..4731
DNA (498bp) protein (166aa)
30S ribosomal protein S3 n=1 Tax=Sphingomonas melonis RepID=UPI00037A7F6D
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309, ECO:0000313|EMBL:AJP72864.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
rpsC; 30S ribosomal protein S3; K02982 small subunit ribosomal protein S3
Displaying 9 items

View Taxonomy