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SCNpilot_expt_500_bf_scaffold_25935

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_25935_1
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2..199)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GBD9_ALIDK
hypothetical protein
AsnC family transcriptional regulator {ECO:0000313|EMBL:GAO23491.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_500_bf_scaffold_25935_2
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(215..481)
DNA (267bp) protein (89aa)
Cytochrome d1, heme region n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GBE0_ALIDK
cytochrome d1, heme region
Cytochrome d1, heme region protein {ECO:0000313|EMBL:ADU99899.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_500_bf_scaffold_25935_3
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(433..1374)
DNA (942bp) protein (314aa)
Cytochrome d1, heme region n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GBE0_ALIDK
cytochrome d1, heme region
Cytochrome d1, heme region {ECO:0000313|EMBL:AEB84716.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_500_bf_scaffold_25935_4
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1371..1472)
DNA (102bp) protein (34aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U0G5_ALIDB
hypothetical protein
Cytochrome c55X NirC {ECO:0000313|EMBL:GAO23489.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_500_bf_scaffold_25935_5
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1685..2083)
DNA (399bp) protein (133aa)
nitrite reductase (NO-forming) (EC:1.7.2.1); K15864 nitrite reductase (NO-forming) / hydroxylamine reductase [EC:1.7.2.1 1.7.99.1]
nitrite reductase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037120F7
Hydroxylamine reductase {ECO:0000313|EMBL:GAD22027.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCNpilot_expt_500_bf_scaffold_25935_6
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2829..3356)
DNA (528bp) protein (176aa)
hydroxylamine reductase (EC:1.7.99.1); K15864 nitrite reductase (NO-forming) / hydroxylamine reductase [EC:1.7.2.1 1.7.99.1]
nitrite reductase n=1 Tax=beta proteobacterium L13 RepID=UPI0003667D2D
Hydroxylamine reductase {ECO:0000313|EMBL:GAD22027.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCNpilot_expt_500_bf_scaffold_25935_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3653..4249)
DNA (597bp) protein (199aa)
Putative transporter, MSF-type n=1 Tax=Variovorax paradoxus B4 RepID=T1X8Z8_VARPD
putative transporter, MSF-type
Putative transporter, MSF-type {ECO:0000313|EMBL:AGU48956.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_bf_scaffold_25935_8
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4249..4806)
DNA (558bp) protein (186aa)
Candidate transporter n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y1R1_RAMTT
transporter; K07552 MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein
Candidate transporter {ECO:0000313|EMBL:AEG92312.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_expt_500_bf_scaffold_25935_9
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4886..5383)
DNA (498bp) protein (166aa)
UPI000399B68C related cluster n=1 Tax=unknown RepID=UPI000399B68C
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
RpoD family RNA polymerase sigma factor; K03086 RNA polymerase primary sigma factor
Displaying 9 items

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