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SCNpilot_expt_500_bf_scaffold_4273

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_4273_1
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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2..955
DNA (954bp) protein (318aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
chorismate synthase; K01736 chorismate synthase [EC:4.2.3.5]
Chorismate synthase n=2 Tax=Microbacterium RepID=H8E3D7_9MICO
SCNpilot_expt_500_bf_scaffold_4273_2
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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952..1479
DNA (528bp) protein (176aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
shikimate kinase; K00891 shikimate kinase [EC:2.7.1.71]
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI00035DC0CB
SCNpilot_expt_500_bf_scaffold_4273_3
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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1476..2558
DNA (1083bp) protein (361aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
aroB; 3-dehydroquinate synthetase; K01735 3-dehydroquinate synthase [EC:4.2.3.4]
3-dehydroquinate synthase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E3D9_9MICO
SCNpilot_expt_500_bf_scaffold_4273_4
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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2555..3013
DNA (459bp) protein (153aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
aroQ; 3-dehydroquinate dehydratase II; K03786 3-dehydroquinate dehydratase II [EC:4.2.1.10]
3-dehydroquinate dehydratase n=1 Tax=Microbacterium sp. 292MF RepID=UPI00037F7CE1
SCNpilot_expt_500_bf_scaffold_4273_5
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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3106..3666
DNA (561bp) protein (187aa)
Elongation factor P n=2 Tax=Microbacterium RepID=H8E3E2_9MICO rbh
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
efp; translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A); K02356 elongation factor P
SCNpilot_expt_500_bf_scaffold_4273_6
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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3685..4095
DNA (411bp) protein (137aa)
N utilization substance protein B homolog n=2 Tax=Microbacterium RepID=H8E3E3_9MICO
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
nusB; transcription termination factor; K03625 N utilization substance protein B
SCNpilot_expt_500_bf_scaffold_4273_7
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(4129..5193)
DNA (1065bp) protein (355aa)
hypothetical protein n=1 Tax=Agromyces italicus RepID=UPI0003B3E441
Contig_13, whole genome shotgun sequence {ECO:0000313|EMBL:KIP92441.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_4273_8
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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5269..6330
DNA (1062bp) protein (354aa)
Putative helicase n=1 Tax=Microbacterium sp. TS-1 RepID=U2YR12_9MICO
Putative helicase {ECO:0000313|EMBL:GAD33208.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
superfamily II DNA/RNA helicase, SNF2 family
SCNpilot_expt_500_bf_scaffold_4273_9
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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6327..8123
DNA (1797bp) protein (599aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002F64744 rbh
Helicase SNF2 {ECO:0000313|EMBL:KDA05658.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
superfamily II DNA/RNA helicase, SNF2 family
SCNpilot_expt_500_bf_scaffold_4273_10
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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8228..8815
DNA (588bp) protein (196aa)
Rieske (2Fe-2S) iron-sulfur domain-containing protein n=2 Tax=Microbacterium RepID=H8E3E5_9MICO
Rieske (2Fe-2S) iron-sulfur domain-containing protein {ECO:0000313|EMBL:EIC08695.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
Zn-dependent hydrolase of the beta-lactamase fold; K14952 UDP-MurNAc hydroxylase
Displaying 10 items

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