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SCNpilot_expt_500_bf_scaffold_4284

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_4284_1
unknown

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1..138
DNA (138bp) protein (46aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_4284_2
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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157..1047
DNA (891bp) protein (297aa)
PHP C-terminal domain protein n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) RepID=A3PK25_RHOS1 rbh
phosphotransferase domain-containing protein; K07053 rbh
PHP C-terminal domain protein {ECO:0000313|EMBL:ABN76691.1}; TaxID=349101 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9).;"
SCNpilot_expt_500_bf_scaffold_4284_3
Kitasatospora setae, Kitasatospora, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(1051..2037)
DNA (987bp) protein (329aa)
Putative LacI family transcriptional regulator n=1 Tax=Kitasatospora setae (strain ATCC 33774 / DSM 43861 / JCM 3304 / KCC A-0304 / NBRC 14216 / KM-6054) RepID=E4NJL7_KITSK
putative LacI family transcriptional regulator
Putative LacI family transcriptional regulator {ECO:0000313|EMBL:BAJ33165.1}; TaxID=452652 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Kitasatospora.;" source="Kitasatospora setae (strain ATCC 33774 / DSM 43861 / JCM 3304 / KCC; A-0304 / NBRC 14216 / KM-6054) (Streptomyces setae).;"
SCNpilot_expt_500_bf_scaffold_4284_4
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2267..2758
DNA (492bp) protein (164aa)
bga19; putative beta-galactosidase; K12308 beta-galactosidase [EC:3.2.1.23]
hypothetical protein n=1 Tax=Streptomyces sp. R1-NS-10 RepID=UPI00036A4FF0
Beta-galactosidase {ECO:0000313|EMBL:KHK98794.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
SCNpilot_expt_500_bf_scaffold_4284_5
Streptomyces bingchenggensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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2713..4329
DNA (1617bp) protein (539aa)
bga19; putative beta-galactosidase; K12308 beta-galactosidase [EC:3.2.1.23] rbh
Putative beta-galactosidase n=1 Tax=Streptomyces bingchenggensis (strain BCW-1) RepID=D7CF61_STRBB rbh
Putative beta-galactosidase {ECO:0000313|EMBL:ADI13077.1}; TaxID=749414 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces bingchenggensis (strain BCW-1).;"
SCNpilot_expt_500_bf_scaffold_4284_6
Streptomyces bingchenggensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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4505..5320
DNA (816bp) protein (272aa)
hypothetical protein n=1 Tax=Streptomyces scabrisporus RepID=UPI0003806830
putative integral membrane transport protein; K02025 multiple sugar transport system permease protein rbh
Putative integral membrane transport protein {ECO:0000313|EMBL:ADI09547.1}; TaxID=749414 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces bingchenggensis (strain BCW-1).;"
SCNpilot_expt_500_bf_scaffold_4284_7
Frigoribacterium sp. MEB024, Frigoribacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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5406..6239
DNA (834bp) protein (278aa)
hypothetical protein n=1 Tax=Streptomyces scabrisporus RepID=UPI0003732CC8
Contig_6, whole genome shotgun sequence {ECO:0000313|EMBL:KIU04040.1}; TaxID=1589899 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Frigoribacterium.;" source="Frigoribacterium sp. MEB024.;"
multiple sugar transport system permease protein
SCNpilot_expt_500_bf_scaffold_4284_8
unknown

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comp(6384..6569)
DNA (186bp) protein (62aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_4284_9
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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6641..7573
DNA (933bp) protein (311aa)
hypothetical protein n=1 Tax=Streptomyces vitaminophilus RepID=UPI0003725684
ABC-type sugar transport system, periplasmic component {ECO:0000313|EMBL:CDK01426.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
sugar ABC transporter periplasmic protein; K02027 multiple sugar transport system substrate-binding protein
SCNpilot_expt_500_bf_scaffold_4284_10
Arthrobacter sp. Rue61a, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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7653..8990
DNA (1338bp) protein (446aa)
bglA3; beta-glucosidase A (EC:3.2.1.21) rbh
Beta-glucosidase A {ECO:0000313|EMBL:AFR28760.1}; EC=3.2.1.21 {ECO:0000313|EMBL:AFR28760.1};; TaxID=1118963 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter sp. Rue61a.;"
hypothetical protein n=1 Tax=Amycolatopsis balhimycina RepID=UPI00037A42CE rbh
SCNpilot_expt_500_bf_scaffold_4284_11
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9041..9868)
DNA (828bp) protein (276aa)
hypothetical protein n=1 Tax=Actinopolymorpha alba RepID=UPI0003803155
Uncharacterized protein {ECO:0000313|EMBL:KFL31975.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
oxidoreductase
SCNpilot_expt_500_bf_scaffold_4284_12
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9956..10771
DNA (816bp) protein (272aa)
hypothetical protein n=1 Tax=Kribbella catacumbae RepID=UPI000370E6DE
Uncharacterized protein {ECO:0000313|EMBL:KFL31974.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
AraC family transcriptional regulator; K02099 AraC family transcriptional regulator, arabinose operon regulatory protein
SCNpilot_expt_500_bf_scaffold_4284_13
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10971..11822)
DNA (852bp) protein (284aa)
mepA; murein endopeptidase transmembrane protein; K07261 penicillin-insensitive murein endopeptidase [EC:3.4.24.-]
Murein endopeptidase n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4R327_9RHIZ rbh
Peptidase {ECO:0000313|EMBL:KFL28461.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
SCNpilot_expt_500_bf_scaffold_4284_14
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11920..12384)
DNA (465bp) protein (155aa)
hypothetical protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00036358F6
Uncharacterized protein {ECO:0000313|EMBL:KEC79209.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_4284_15
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12381..13190)
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036215A9
Transcriptional regulator, IclR family {ECO:0000313|EMBL:CDX24551.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
transcriptional regulator, IclR family
SCNpilot_expt_500_bf_scaffold_4284_16
Actinoplanes utahensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13447..14490)
DNA (1044bp) protein (348aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000375F9FC rbh
3-carboxymuconate cyclase {ECO:0000313|EMBL:KHD74319.1}; TaxID=1869 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes utahensis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_4284_17
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(14512..15675)
DNA (1164bp) protein (388aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003668BE4 rbh
alanine racemase
Alanine racemase domain protein {ECO:0000313|EMBL:ADB48615.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_expt_500_bf_scaffold_4284_18
Saccharothrix espanaensis, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15692..16393)
DNA (702bp) protein (234aa)
N-acyl-D-amino-acid deacylase (EC:3.5.1.81)
N-acyl-D-amino-acid deacylase {ECO:0000313|EMBL:CCH33861.1}; EC=3.5.1.81 {ECO:0000313|EMBL:CCH33861.1};; TaxID=1179773 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 /; NBRC 15066 / NRRL 15764).;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036E26DF rbh
Displaying 18 items

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