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SCNpilot_expt_500_bf_scaffold_4456

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_4456_1
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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209..1087
DNA (879bp) protein (293aa)
Resolvase, N terminal domain protein n=1 Tax=Xanthomonas axonopodis pv. punicae str. LMG 859 RepID=H1XMK2_9XANT
Resolvase, N terminal domain protein {ECO:0000313|EMBL:CCF70432.1}; TaxID=1085630 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. punicae str. LMG 859.;"
resolvase site-specific recombinase
SCNpilot_expt_500_bf_scaffold_4456_2
Achromobacter sp. LM16, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1169..1801
DNA (633bp) protein (211aa)
ParA protein n=1 Tax=Serratia marcescens RepID=Q8VW79_SERMA rbh
Partitioning protein A {ECO:0000313|EMBL:AJW29845.1}; TaxID=1449778 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter sp. LM16.;"
ParaA family ATPase; K03496 chromosome partitioning protein
SCNpilot_expt_500_bf_scaffold_4456_3
Achromobacter sp. LM16, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1822..2046
DNA (225bp) protein (75aa)
Plasmid stabilization protein n=1 Tax=Pseudomonas aeruginosa PA21_ST175 RepID=M3BDD9_PSEAI
Partitioning protein B {ECO:0000313|EMBL:AJW29844.1}; TaxID=1449778 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter sp. LM16.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_4456_4
Achromobacter sp. LM16, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2100..3218
DNA (1119bp) protein (373aa)
Plasmid replication initiator protein n=1 Tax=Pseudomonas aeruginosa PA21_ST175 RepID=M3BDU0_PSEAI rbh
Replication initiation protein {ECO:0000313|EMBL:AJW29843.1}; TaxID=1449778 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter sp. LM16.;"
repA-like protein rbh
SCNpilot_expt_500_bf_scaffold_4456_5
unknown

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comp(3559..4110)
DNA (552bp) protein (184aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_4456_6
Achromobacter sp. LM16, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4146..5057
DNA (912bp) protein (304aa)
KfrA protein n=1 Tax=Pseudomonas aeruginosa RepID=A7MAI0_PSEAI rbh
KfrA protein {ECO:0000313|EMBL:AJW29861.1}; TaxID=1449778 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter sp. LM16.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_4456_7
Achromobacter sp. LM16, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5229..5570)
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Xanthomonas axonopodis pv. punicae str. LMG 859 RepID=H1XMU8_9XANT
Uncharacterized protein {ECO:0000313|EMBL:AJW29860.1}; TaxID=1449778 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter sp. LM16.;"
SCNpilot_expt_500_bf_scaffold_4456_8
Achromobacter sp. LM16, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5581..7005)
DNA (1425bp) protein (475aa)
TraG n=1 Tax=Pseudomonas aeruginosa RepID=Q6X3G3_PSEAI
Conjugal transfer protein TraG {ECO:0000313|EMBL:AJW29859.1}; TaxID=1449778 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter sp. LM16.;"
conjugal transfer protein TraG rbh
SCNpilot_expt_500_bf_scaffold_4456_9
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6956..8062)
DNA (1107bp) protein (369aa)
TraG n=1 Tax=Pseudomonas aeruginosa RepID=Q6X3G3_PSEAI
TraG {ECO:0000313|EMBL:AKH45403.1}; TaxID=208964 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG; 12228).;"
SCNpilot_expt_500_bf_scaffold_4456_10
Achromobacter sp. LM16, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8094..8537)
DNA (444bp) protein (148aa)
TraC n=1 Tax=Pseudomonas aeruginosa RepID=Q6X3G1_PSEAI
Conjugal transfer protein TraC {ECO:0000313|EMBL:AJW29857.1}; TaxID=1449778 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter sp. LM16.;"
traC; TraC protein
SCNpilot_expt_500_bf_scaffold_4456_11
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8731..12081
DNA (3351bp) protein (1117aa)
TraA n=1 Tax=Pseudomonas aeruginosa RepID=M1RFK1_PSEAI rbh
TraA {ECO:0000313|EMBL:AGG19209.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
Ti-type conjugative transfer relaxase TraA rbh
SCNpilot_expt_500_bf_scaffold_4456_12
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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12167..12556
DNA (390bp) protein (130aa)
Uncharacterized protein n=3 Tax=Proteobacteria RepID=T2K1B7_ACHDE
Uncharacterized protein {ECO:0000313|EMBL:AKH45407.1}; TaxID=208964 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG; 12228).;"
SCNpilot_expt_500_bf_scaffold_4456_13
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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12629..12850
DNA (222bp) protein (74aa)
Uncharacterized protein n=3 Tax=Proteobacteria RepID=M1RSX9_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:AGG19211.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
SCNpilot_expt_500_bf_scaffold_4456_14
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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12847..13752
DNA (906bp) protein (302aa)
DegP n=1 Tax=Pseudomonas aeruginosa RepID=M1S0Z9_PSEAI rbh
DegP {ECO:0000313|EMBL:AGG19212.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
trypsin domain-containing protein
SCNpilot_expt_500_bf_scaffold_4456_15
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13848..14186
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa RepID=Q6X3F6_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:AGG19213.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_4456_16
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14249..14437)
DNA (189bp) protein (63aa)
Tox1 n=1 Tax=Pseudomonas aeruginosa RepID=Q6X3F5_PSEAI
Tox1 {ECO:0000313|EMBL:AGG19214.1}; Uncharacterized protein {ECO:0000313|EMBL:AAP22632.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
hypothetical protein
Displaying 16 items

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