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SCNpilot_expt_500_bf_scaffold_13796

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_13796_1
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..161)
DNA (159bp) protein (53aa)
Transcriptional regulator n=1 Tax=Rhodanobacter denitrificans RepID=M4NFG8_9GAMM
transcriptional regulator
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_13796_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(168..1175)
DNA (1008bp) protein (336aa)
ornithine carbamoyltransferase (EC:2.1.3.9) rbh
Ornithine carbamoyltransferase {ECO:0000313|EMBL:AGG88357.1}; EC=2.1.3.9 {ECO:0000313|EMBL:AGG88357.1};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Ornithine carbamoyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NEI4_9GAMM rbh
SCNpilot_expt_500_bf_scaffold_13796_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1570..2094)
DNA (525bp) protein (175aa)
Putative outer membrane lipoprotein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5U5_9GAMM
Putative outer membrane lipoprotein {ECO:0000313|EMBL:EIL94836.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative outer membrane lipoprotein
SCNpilot_expt_500_bf_scaffold_13796_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2345..2665
DNA (321bp) protein (107aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQ34_9GAMM
SCNpilot_expt_500_bf_scaffold_13796_5
RBG_19FT_COMBO_Deltaproteobacteria_58_16_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2742..2951)
DNA (210bp) protein (70aa)
Tax=RBG_19FT_COMBO_Deltaproteobacteria_58_16_curated
SCNpilot_expt_500_bf_scaffold_13796_6
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3051..3614
DNA (564bp) protein (188aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
cysteinyl-tRNA synthetase (EC:6.1.1.16)
cysteinyl-tRNA synthetase n=1 Tax=Dyella ginsengisoli RepID=UPI000361439A
SCNpilot_expt_500_bf_scaffold_13796_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3670..4104
DNA (435bp) protein (145aa)
SufE protein probably involved in Fe-S center assembly n=1 Tax=Rhodanobacter denitrificans RepID=M4NCI1_9GAMM
SufE protein probably involved in Fe-S center assembly
SufE protein probably involved in Fe-S center assembly {ECO:0000313|EMBL:AGG88354.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_13796_8
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4260..4514)
DNA (255bp) protein (85aa)
RNA polymerase-binding transcription factor DksA n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VNP5_9GAMM
RNA polymerase-binding protein DksA
RNA polymerase-binding transcription factor DksA {ECO:0000256|HAMAP-Rule:MF_00926}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Displaying 8 items

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