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SCNpilot_expt_500_bf_scaffold_2459

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2459_1
Microbacterium oleivorans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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3..185
DNA (183bp) protein (61aa)
hypothetical protein n=1 Tax=Microbacterium RepID=UPI0003718EDC
Putative integral membrane protein {ECO:0000313|EMBL:EZP29476.1}; TaxID=273677 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oleivorans.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2459_2
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(210..1235)
DNA (1026bp) protein (342aa)
Dihydroorotate dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00054567}; EC=1.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821};; DHOdehase {ECO:0000256|HAMAP-Rule:MF_00225}; Dihydroorotate oxidase {ECO:0000256|HAMAP-Rule:MF_00225}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
pyrD; dihydroorotate dehydrogenase; K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1]
Dihydroorotate dehydrogenase (quinone) n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A4D8_9MICO rbh
SCNpilot_expt_500_bf_scaffold_2459_3
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(1289..1756)
DNA (468bp) protein (156aa)
Transcriptional repressor NrdR n=2 Tax=Microbacterium RepID=H8E2N4_9MICO
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
nrdR; transcriptional regulator; K07738 transcriptional repressor NrdR
SCNpilot_expt_500_bf_scaffold_2459_4
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1757..3067)
DNA (1311bp) protein (437aa)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
hisD; histidinol dehydrogenase; K00013 histidinol dehydrogenase [EC:1.1.1.23]
Histidinol dehydrogenase n=2 Tax=Microbacterium RepID=H8E2N3_9MICO rbh
SCNpilot_expt_500_bf_scaffold_2459_5
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(3098..4144)
DNA (1047bp) protein (349aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3B4P8_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EPD83559.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2459_6
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4202..7672)
DNA (3471bp) protein (1157aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
dnaE; DNA polymerase III, alpha subunit; K02337 DNA polymerase III subunit alpha [EC:2.7.7.7]
DNA polymerase III, alpha subunit n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E2N1_9MICO rbh
SCNpilot_expt_500_bf_scaffold_2459_7
Nocardia nova, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(7759..8598)
DNA (840bp) protein (280aa)
hypothetical protein n=1 Tax=Nocardia sp. BMG111209 RepID=UPI0003762434
Putative polysaccharide deacetylase {ECO:0000313|EMBL:AHH15525.1}; TaxID=1415166 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia nova SH22a.;"
polysaccharide deacetylase
SCNpilot_expt_500_bf_scaffold_2459_8
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8737..10419)
DNA (1683bp) protein (561aa)
Long-chain fatty acid--CoA ligase {ECO:0000313|EMBL:EXJ51729.1}; EC=6.2.1.3 {ECO:0000313|EMBL:EXJ51729.1};; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3]
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AN05_9MICO
SCNpilot_expt_500_bf_scaffold_2459_9
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10481..10966)
DNA (486bp) protein (162aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
rlu; pseudouridylate synthase, 23S RNA-specific; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
Pseudouridine synthase n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A3A4_9MICO
SCNpilot_expt_500_bf_scaffold_2459_10
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11360..11929)
DNA (570bp) protein (190aa)
lipoprotein signal peptidase; K03101 signal peptidase II [EC:3.4.23.36]
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|SAAS:SAAS00112541}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|SAAS:SAAS00112508};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
hypothetical protein n=1 Tax=Microbacterium sp. 11MF RepID=UPI00036D6708
SCNpilot_expt_500_bf_scaffold_2459_11
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11938..12552)
DNA (615bp) protein (205aa)
DivIVA domain-containing protein n=2 Tax=Microbacterium RepID=H8E2M6_9MICO
Cell division protein {ECO:0000313|EMBL:KIC57505.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
cell division initiation protein
SCNpilot_expt_500_bf_scaffold_2459_12
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12664..12966)
DNA (303bp) protein (101aa)
Uncharacterized protein n=2 Tax=Microbacterium RepID=H8E2M5_9MICO
Membrane protein {ECO:0000313|EMBL:KIC57506.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
integral membrane protein; K02221 YggT family protein
SCNpilot_expt_500_bf_scaffold_2459_13
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12969..13436)
DNA (468bp) protein (156aa)
Cell division protein SepF n=2 Tax=Microbacterium RepID=H8E2M4_9MICO
Cell division protein SepF {ECO:0000256|HAMAP-Rule:MF_01197}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
hypothetical protein; K09772 cell division inhibitor SepF
SCNpilot_expt_500_bf_scaffold_2459_14
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13469..14191)
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E2M3_9MICO rbh
Uncharacterized protein {ECO:0000313|EMBL:EIC08753.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
hypothetical protein; K06997
SCNpilot_expt_500_bf_scaffold_2459_15
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14188..15342)
DNA (1155bp) protein (385aa)
Cell division protein FtsZ n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3B4Q9_9MICO rbh
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
ftsZ; cell division GTPase; K03531 cell division protein FtsZ
SCNpilot_expt_500_bf_scaffold_2459_16
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15490..16401)
DNA (912bp) protein (304aa)
hypothetical protein n=1 Tax=Microbacterium sp. 11MF RepID=UPI00036B2A98
Uncharacterized protein {ECO:0000313|EMBL:KHK96923.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
cell division septal protein; K03589 cell division protein FtsQ
SCNpilot_expt_500_bf_scaffold_2459_17
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16405..17793)
DNA (1389bp) protein (463aa)
UDP-N-acetylmuramate--L-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344}; EC=6.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344};; UDP-N-acetylmuramoyl-L-alanine synthetase {ECO:0000256|HAMAP-Rule:MF_00046}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
murC; UDP-N-acetylmuramate-alanine ligase; K01924 UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
UDP-N-acetylmuramate--L-alanine ligase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E2M0_9MICO
SCNpilot_expt_500_bf_scaffold_2459_18
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17879..18967)
DNA (1089bp) protein (363aa)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082867}; EC=2.4.1.227 {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082938};; Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase {ECO:0000256|HAMAP-Rule:MF_00033}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; K02563 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
UDP-diphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase n=1 Tax=Microbacterium sp. 292MF RepID=UPI00037BB965
SCNpilot_expt_500_bf_scaffold_2459_19
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18978..19229)
DNA (252bp) protein (84aa)
Bacterial cell division membrane protein n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8N848_MICTS
Bacterial cell division membrane protein {ECO:0000313|EMBL:CDK00996.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
bacterial cell division membrane protein; K03588 cell division protein FtsW
Displaying 19 items

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