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SCNpilot_expt_500_bf_scaffold_2589

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2589_1
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(2..160)
DNA (159bp) protein (53aa)
50S ribosomal protein L28 n=1 Tax=Microbacterium paraoxydans RepID=UPI00036361EC
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
rpmB; ribosomal protein L28; K02902 large subunit ribosomal protein L28
SCNpilot_expt_500_bf_scaffold_2589_2
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

580..3663
DNA (3084bp) protein (1028aa)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI00037D5F6A rbh
hypothetical membrane protein
Hypothetical membrane protein {ECO:0000313|EMBL:CCE75388.1}; TaxID=1097677 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. nebraskensis NCPPB 2581.;"
SCNpilot_expt_500_bf_scaffold_2589_3
Boreogadus saida, Boreogadus, Gadiformes, Neopterygii, Chordata, Metazoa

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comp(4412..5287)
DNA (876bp) protein (292aa)
Antifreeze glycoprotein n=1 Tax=Boreogadus saida RepID=A4K455_BORSA
Antifreeze glycoprotein {ECO:0000313|EMBL:ABD85297.1}; TaxID=44932 species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Boreogadus.;" source="Boreogadus saida (Polar cod).;"
GK24882 gene product from transcript GK24882-RA
SCNpilot_expt_500_bf_scaffold_2589_4
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(6070..7485)
DNA (1416bp) protein (472aa)
Uncharacterized protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E6W6_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EXJ51769.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2589_5
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(7475..8257)
DNA (783bp) protein (261aa)
Uncharacterized protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E6W5_9MICO rbh
Uncharacterized protein {ECO:0000313|EMBL:KIC58759.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2589_6
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(8259..9287)
DNA (1029bp) protein (343aa)
Putative permease n=1 Tax=Microbacterium sp. TS-1 RepID=U2XAU2_9MICO
Putative permease {ECO:0000313|EMBL:GAD34771.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
permease; K07089
SCNpilot_expt_500_bf_scaffold_2589_7
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(9280..9693)
DNA (414bp) protein (138aa)
Ferric-uptake regulator n=2 Tax=Microbacterium RepID=H8E6W3_9MICO
Peptide ABC transporter substrate-binding protein {ECO:0000313|EMBL:KIC58721.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
fur; Fe2+/Zn2+ uptake regulation proteins; K03711 Fur family transcriptional regulator, ferric uptake regulator
SCNpilot_expt_500_bf_scaffold_2589_8
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9750..10604)
DNA (855bp) protein (285aa)
ABC transporter permease n=1 Tax=Microbacterium yannicii RepID=UPI00031DDD94
Mn/Zn ABC transporter permease protein {ECO:0000313|EMBL:GAD34769.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
znuB; Mn/Zn ABC transporter permease; K02075 zinc/manganese transport system permease protein
SCNpilot_expt_500_bf_scaffold_2589_9
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10620..11204)
DNA (585bp) protein (195aa)
Mn/Zn ABC transporter ATP-binding protein n=1 Tax=Microbacterium sp. TS-1 RepID=U2YW11_9MICO
Mn/Zn ABC transporter ATP-binding protein {ECO:0000313|EMBL:GAD34768.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
fhuC; Mn/Zn ABC transporter ATPase; K02074 zinc/manganese transport system ATP-binding protein
SCNpilot_expt_500_bf_scaffold_2589_10
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11427..12425)
DNA (999bp) protein (333aa)
Metal ABC transporter substrate-binding protein n=1 Tax=Microbacterium sp. TS-1 RepID=U2XNU6_9MICO rbh
Metal ABC transporter substrate-binding protein {ECO:0000313|EMBL:GAD34735.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
metal ABC transporter periplasmic protein; K02077 zinc/manganese transport system substrate-binding protein
SCNpilot_expt_500_bf_scaffold_2589_11
BJP_IG2157_Actinomycetales_63_19, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(13560..15248)
DNA (1689bp) protein (563aa)
phosphoketolase (EC:4.1.2.22); K01632 fructose-6-phosphate phosphoketolase [EC:4.1.2.22]
Phosphoketolase n=1 Tax=Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74) RepID=D1BBI0_SANKS
Tax=BJP_IG2157_Actinomycetales_63_19
SCNpilot_expt_500_bf_scaffold_2589_12
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16005..17366)
DNA (1362bp) protein (454aa)
pdhC; pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component; K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12]
Pyruvate dehydrogenase E2 component (Dihydrolipoamide acetyltransferase) n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A5T3_9MICO rbh
Branched-chain alpha-keto acid dehydrogenase subunit E2 {ECO:0000313|EMBL:KIC58714.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
SCNpilot_expt_500_bf_scaffold_2589_13
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17410..18390)
DNA (981bp) protein (327aa)
pdhB; pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit; K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
2-oxoisovalerate dehydrogenase subunit beta n=1 Tax=Microbacterium sp. 11MF RepID=UPI00035EBE69 rbh
2-oxoisovalerate dehydrogenase subunit beta {ECO:0000313|EMBL:EXJ51757.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
SCNpilot_expt_500_bf_scaffold_2589_14
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18387..19397)
DNA (1011bp) protein (337aa)
pdhA; pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit; K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
Pyruvate dehydrogenase E1 component subunit alpha n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A793_9MICO
Pyruvate dehydrogenase E1 component subunit alpha {ECO:0000313|EMBL:EPD84461.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
SCNpilot_expt_500_bf_scaffold_2589_15
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19531..20532)
DNA (1002bp) protein (334aa)
Putative phenylalanine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01513}; EC=2.6.1.- {ECO:0000256|HAMAP-Rule:MF_01513};; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
hisC2; histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; K00817 histidinol-phosphate aminotransferase [EC:2.6.1.9]
Putative phenylalanine aminotransferase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E6V3_9MICO rbh
SCNpilot_expt_500_bf_scaffold_2589_16
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20594..20989
DNA (396bp) protein (132aa)
membrane protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI0003812514
Uncharacterized protein {ECO:0000313|EMBL:EPD84459.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
hypothetical protein; K08972 putative membrane protein
SCNpilot_expt_500_bf_scaffold_2589_17
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20958..22295)
DNA (1338bp) protein (446aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A5T0_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EPD84458.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
SCNpilot_expt_500_bf_scaffold_2589_18
unknown

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comp(22295..22573)
DNA (279bp) protein (93aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2589_19
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22792..23235
DNA (444bp) protein (148aa)
ptpA; protein-tyrosine-phosphatase; K01104 protein-tyrosine phosphatase [EC:3.1.3.48]
Protein-tyrosine phosphatase, low molecular weight n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E6U9_9MICO
Protein tyrosine phosphatase {ECO:0000313|EMBL:KIC58757.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
SCNpilot_expt_500_bf_scaffold_2589_20
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(23130..24056)
DNA (927bp) protein (309aa)
putative thermoresistant gluconokinase n=1 Tax=Burkholderia thailandensis RepID=UPI00016A2CAC
Uncharacterized protein {ECO:0000313|EMBL:KIJ71741.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
SCNpilot_expt_500_bf_scaffold_2589_21
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24083..24628
DNA (546bp) protein (182aa)
purB; adenylosuccinate lyase; K01756 adenylosuccinate lyase [EC:4.3.2.2]
Adenylosuccinate lyase n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3ACQ9_9MICO
Adenylosuccinate lyase {ECO:0000313|EMBL:KIC58756.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
SCNpilot_expt_500_bf_scaffold_2589_22
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24648..24953)
DNA (306bp) protein (102aa)
Amino acid transporter n=2 Tax=Microbacterium RepID=H8E6U7_9MICO
Amino acid transporter {ECO:0000313|EMBL:EIC07383.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
amino acid transporters
SCNpilot_expt_500_bf_scaffold_2589_23
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24950..25525)
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. TS-1 RepID=U2YNI3_9MICO
Uncharacterized protein {ECO:0000313|EMBL:GAD34704.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
SCNpilot_expt_500_bf_scaffold_2589_24
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25593..25961)
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. TS-1 RepID=U2XNJ3_9MICO
Uncharacterized protein {ECO:0000313|EMBL:GAD34492.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2589_25
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25963..26916)
DNA (954bp) protein (318aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A784_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EPD84451.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
oxidoreductase rbh
SCNpilot_expt_500_bf_scaffold_2589_26
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26987..27844)
DNA (858bp) protein (286aa)
Alpha/beta hydrolase fold containing protein n=2 Tax=Microbacterium RepID=H8E6P1_9MICO
Alpha/beta hydrolase fold containing protein {ECO:0000313|EMBL:EIC07327.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
hydrolase or acyltransferase
SCNpilot_expt_500_bf_scaffold_2589_27
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27917..29422)
DNA (1506bp) protein (502aa)
MATE efflux family protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AQF9_9MICO rbh
Diguanylate cyclase {ECO:0000313|EMBL:KIC57885.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
MATE efflux family protein
SCNpilot_expt_500_bf_scaffold_2589_28
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29633..30583
DNA (951bp) protein (317aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A723_9MICO
ABC transporter {ECO:0000313|EMBL:KIC57886.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
hypothetical protein; K09781 hypothetical protein
SCNpilot_expt_500_bf_scaffold_2589_29
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30539..31630)
DNA (1092bp) protein (364aa)
HAD hydrolase, family IA n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3ACK5_9MICO
HAD hydrolase, family IA {ECO:0000313|EMBL:EPD84390.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
hydrolase
SCNpilot_expt_500_bf_scaffold_2589_30
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32226..33278
DNA (1053bp) protein (351aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A802_9MICO
Uncharacterized protein {ECO:0000313|EMBL:KJL22734.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
hypothetical protein
Displaying items 1-30 of 57 in total

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