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SCNpilot_expt_500_bf_scaffold_7218

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_7218_1
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..581
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PEH5_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS41057.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_7218_2
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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663..1148
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PHM9_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS41056.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_7218_3
Saccharothrix espanaensis, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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1239..1697
DNA (459bp) protein (153aa)
Transcriptional regulator, AraC family n=1 Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0K448_SACES
Transcriptional regulator, AraC family
Transcriptional regulator, AraC family {ECO:0000313|EMBL:CCH31338.1}; TaxID=1179773 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 /; NBRC 15066 / NRRL 15764).;"
SCNpilot_expt_500_bf_scaffold_7218_4
Streptomyces sp. SPB74, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(1973..2287)
DNA (315bp) protein (105aa)
3-hydroxyisobutyrate dehydrogenase n=1 Tax=Streptomyces sp. SPB74 RepID=B5GK29_9ACTO
3-hydroxyisobutyrate dehydrogenase {ECO:0000313|EMBL:EDY46675.3}; TaxID=465543 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. (strain SPB74).;"
6-phosphogluconate dehydrogenase
SCNpilot_expt_500_bf_scaffold_7218_5
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2227..2814)
DNA (588bp) protein (196aa)
2-hydroxy-3-oxopropionate reductase; K00020 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI000368BCC2
NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase family protein {ECO:0000313|EMBL:AJZ62602.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungorum.;"
SCNpilot_expt_500_bf_scaffold_7218_6
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3122..4183
DNA (1062bp) protein (354aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8NWA2_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS32744.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_7218_7
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4554..5336
DNA (783bp) protein (261aa)
short-chain reductase/dehydrogenase 3-oxoacyl-[acyl-carrier-protein] reductase (EC:1.1.1.100); K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] rbh
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PEH0_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS41052.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_500_bf_scaffold_7218_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5347..5760)
DNA (414bp) protein (138aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q219M5_RHOPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD86911.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_expt_500_bf_scaffold_7218_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5881..6723
DNA (843bp) protein (281aa)
beta-lactamase n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037C93FE rbh
Beta-lactamase {ECO:0000313|EMBL:KIZ34884.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
Beta-lactamase-like rbh
SCNpilot_expt_500_bf_scaffold_7218_10
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6806..7648
DNA (843bp) protein (281aa)
5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC:5.3.3.10); K01826 5-carboxymethyl-2-hydroxymuconate isomerase [EC:5.3.3.10] rbh
5-carboxymethyl-2-hydroxymuconate delta-isomerase {ECO:0000313|EMBL:ABE41304.1}; EC=5.3.3.10 {ECO:0000313|EMBL:ABE41304.1};; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
5-carboxymethyl-2-hydroxymuconate delta-isomerase n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q131D5_RHOPS rbh
SCNpilot_expt_500_bf_scaffold_7218_11
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7742..8359
DNA (618bp) protein (206aa)
glutathione S-transferase; K00799 glutathione S-transferase [EC:2.5.1.18] rbh
Putative Glutathione S-transferase n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TUS4_9BRAD rbh
Glutathione S-transferase {ECO:0000313|EMBL:ETR77061.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
SCNpilot_expt_500_bf_scaffold_7218_12
unknown

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comp(9237..9311)
DNA (75bp) protein (25aa)

This feature has no annotations

Displaying 12 items

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