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SCNpilot_expt_500_bf_scaffold_7868

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_7868_1
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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1..384
DNA (384bp) protein (128aa)
16S RNA G1207 methylase RsmC n=1 Tax=Microbacterium sp. 292MF RepID=UPI0003656FFD
16S RNA G1207 methylase RsmC {ECO:0000313|EMBL:CDJ98935.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
16S RNA G1207 methylase RsmC
SCNpilot_expt_500_bf_scaffold_7868_2
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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381..1340
DNA (960bp) protein (320aa)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI00035FA578 rbh
Peroxidase {ECO:0000313|EMBL:KHK96161.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
Pc16g10660; K07223 putative iron-dependent peroxidase rbh
SCNpilot_expt_500_bf_scaffold_7868_3
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(1372..2238)
DNA (867bp) protein (289aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
dapF; diaminopimelate epimerase; K01778 diaminopimelate epimerase [EC:5.1.1.7]
Diaminopimelate epimerase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E2C2_9MICO
SCNpilot_expt_500_bf_scaffold_7868_4
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(2235..3191)
DNA (957bp) protein (319aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase; K00791 tRNA dimethylallyltransferase [EC:2.5.1.75]
tRNA dimethylallyltransferase n=2 Tax=Microbacterium RepID=H8E2C1_9MICO rbh
SCNpilot_expt_500_bf_scaffold_7868_5
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(3188..4102)
DNA (915bp) protein (305aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
(dimethylallyl)adenosine tRNA methylthiotransferase n=1 Tax=Microbacterium yannicii RepID=UPI0002E8F606
2-methylthioadenine synthetase
SCNpilot_expt_500_bf_scaffold_7868_6
unknown

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comp(5453..5587)
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_7868_7
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(5587..6636)
DNA (1050bp) protein (350aa)
Protein RecA n=3 Tax=Microbacterium RepID=H8E2B5_9MICO
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
recA; RecA/RadA recombinase; K03553 recombination protein RecA
SCNpilot_expt_500_bf_scaffold_7868_8
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(6881..7156)
DNA (276bp) protein (92aa)
hypothetical protein n=1 Tax=Microbacterium sp. B19 RepID=UPI00034DA224
Uncharacterized protein {ECO:0000313|EMBL:KIC56465.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_7868_9
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(7104..7421)
DNA (318bp) protein (106aa)
Helix-turn-helix domain protein n=2 Tax=Microbacterium RepID=H8E2B3_9MICO
XRE family transcriptional regulator {ECO:0000313|EMBL:KDA05802.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
transcriptional regulator
SCNpilot_expt_500_bf_scaffold_7868_10
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(7514..8518)
DNA (1005bp) protein (335aa)
phosphatidylglycerophosphate synthase; K00995 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase n=2 Tax=Microbacterium RepID=H8E2B1_9MICO
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:KIC56462.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
Displaying 10 items

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