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SCNpilot_expt_500_bf_scaffold_8

Search features with annotation key words

Displaying items 1-30 of 277 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_8_1
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2..4825)
DNA (4824bp) protein (1608aa)
YD repeat protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TBY0_NIAKG rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO44102.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
YD repeat protein rbh
SCNpilot_expt_500_bf_scaffold_8_2
unknown

Not on your lists

comp(4916..5746)
DNA (831bp) protein (277aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_8_3
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5768..12763)
DNA (6996bp) protein (2332aa)
PA14 domain protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TAM8_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:GAO44101.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
PA14 domain-containing protein
SCNpilot_expt_500_bf_scaffold_8_4
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12771..13868)
DNA (1098bp) protein (366aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PM13_CHIPD
Uncharacterized protein {ECO:0000313|EMBL:GAO44100.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_8_5
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13897..16137)
DNA (2241bp) protein (747aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PM12_CHIPD rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACU62226.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_500_bf_scaffold_8_6
unknown

Not on your lists

16212..16814
DNA (603bp) protein (201aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_8_7
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16749..17294)
DNA (546bp) protein (182aa)
Transposase n=1 Tax=Niabella soli DSM 19437 RepID=H1NND0_9SPHI
Transposase {ECO:0000313|EMBL:AHF15307.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
transposase
SCNpilot_expt_500_bf_scaffold_8_8
unknown

Not on your lists

comp(17572..19011)
DNA (1440bp) protein (480aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_8_9
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(19008..19547)
DNA (540bp) protein (180aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4L1R5_HALH1
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_500_bf_scaffold_8_10
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19599..21347)
DNA (1749bp) protein (583aa)
Uncharacterized protein n=1 Tax=Kordia algicida OT-1 RepID=A9E3G2_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:GAO45502.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_8_11
Cyclobacterium marinum, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

21564..22283
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=Cytophagales str. B6 RepID=UPI0003B333A3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEL26225.1}; Flags: Precursor;; TaxID=880070 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium marinum (strain ATCC 25205 / DSM 745) (Flectobacillus; marinus).;"
SCNpilot_expt_500_bf_scaffold_8_12
unknown

Not on your lists

22647..23354
DNA (708bp) protein (236aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_8_13
Pontibacter korlensis, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(23356..24243)
DNA (888bp) protein (296aa)
ROK family protein; K00845 glucokinase [EC:2.7.1.2]
ROK family protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PHH9_CHIPD
Uncharacterized protein {ECO:0000313|EMBL:AKD02309.1}; TaxID=400092 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter korlensis.;"
SCNpilot_expt_500_bf_scaffold_8_14
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24286..26571)
DNA (2286bp) protein (762aa)
Alpha-1,2-mannosidase n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QG27_SPILD rbh
Alpha-mannosidase {ECO:0000313|EMBL:KIC93787.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
alpha-1,2-mannosidase rbh
SCNpilot_expt_500_bf_scaffold_8_15
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(26574..28580)
DNA (2007bp) protein (669aa)
xanthan lyase n=1 Tax=Dyadobacter beijingensis RepID=UPI0003773440 rbh
xanthan lyase rbh
Xanthan lyase {ECO:0000313|EMBL:ACT95911.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_expt_500_bf_scaffold_8_16
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(28590..29813)
DNA (1224bp) protein (408aa)
hypothetical protein n=1 Tax=Spirosoma spitsbergense RepID=UPI0003747F20 rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:CCH54141.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
major facilitator transporter rbh
SCNpilot_expt_500_bf_scaffold_8_17
Pedobacter sp. BAL39, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29832..30569)
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6E9D5_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EDM37766.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_8_18
Flammeovirgaceae bacterium 311, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(30728..33097)
DNA (2370bp) protein (790aa)
Putative alpha-1,2-mannosidase n=1 Tax=Bacteroides uniformis ATCC 8492 RepID=A7V8Z3_BACUN rbh
Alpha-1,2-mannosidase {ECO:0000313|EMBL:AHM63173.1}; TaxID=1257021 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; unclassified Flammeovirgaceae.;" source="Flammeovirgaceae bacterium 311.;"
alpha-1,2-mannosidase rbh
SCNpilot_expt_500_bf_scaffold_8_19
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(33104..34993)
DNA (1890bp) protein (630aa)
Uncharacterized protein n=2 Tax=Parabacteroides johnsonii RepID=K5Z6R0_9PORP rbh
Uncharacterized protein {ECO:0000313|EMBL:EKN11239.1}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_8_20
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(35055..36059)
DNA (1005bp) protein (335aa)
Transcriptional regulator, LacI family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TLM3_NIAKG rbh
LacI family transcriptional regulator; K02529 LacI family transcriptional regulator rbh
Transcriptional regulator, LacI family {ECO:0000313|EMBL:AEV96592.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_500_bf_scaffold_8_21
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(36067..37755)
DNA (1689bp) protein (563aa)
Uncharacterized protein n=1 Tax=Bacteroides ovatus CL03T12C18 RepID=I9TJI8_BACOV rbh
Uncharacterized protein {ECO:0000313|EMBL:EIY69511.1}; TaxID=997886 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus CL03T12C18.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_8_22
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(37752..39377)
DNA (1626bp) protein (542aa)
Putative secreted protein, putative xanthan lyase related n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01Q67_SOLUE rbh
hypothetical protein rbh
Putative secreted protein, putative xanthan lyase related {ECO:0000313|EMBL:ABJ88203.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
SCNpilot_expt_500_bf_scaffold_8_23
Coprobacter sp. 177, Coprobacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(39405..41105)
DNA (1701bp) protein (567aa)
Uncharacterized protein n=1 Tax=Tannerella sp. CAG:118 RepID=R5I6F1_9PORP rbh
Uncharacterized protein {ECO:0000313|EMBL:KHM45445.1}; TaxID=1572646 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Coprobacter.;" source="Coprobacter sp. 177.;"
RagB/SusD family protein
SCNpilot_expt_500_bf_scaffold_8_24
Tannerella sp. CAG:118, Tannerella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(41128..44343)
DNA (3216bp) protein (1072aa)
SusC/RagA family TonB-linked outer membrane protein n=1 Tax=Tannerella sp. CAG:118 RepID=R5IB30_9PORP rbh
SusC/RagA family TonB-linked outer membrane protein {ECO:0000313|EMBL:CCY37519.1}; TaxID=1262978 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Tannerella; environmental samples.;" source="Tannerella sp. CAG:118.;"
Outer membrane receptor proteins, mostly Fe transport
SCNpilot_expt_500_bf_scaffold_8_25
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(44608..45456)
DNA (849bp) protein (283aa)
Beta-lactamase domain protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T6Y3_NIAKG
Putative hydrolase {ECO:0000313|EMBL:GAO41070.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
beta-lactamase
SCNpilot_expt_500_bf_scaffold_8_26
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(45469..46413)
DNA (945bp) protein (315aa)
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W4G5_DYAFD rbh
hypothetical protein; K05786 chloramphenicol-sensitive protein RarD rbh
Uncharacterized protein {ECO:0000313|EMBL:ACT94066.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_expt_500_bf_scaffold_8_27
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(46612..47187)
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037954CD
Uncharacterized protein {ECO:0000313|EMBL:AHF17493.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_8_28
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(47299..48702)
DNA (1404bp) protein (468aa)
metallo-beta-lactamase n=1 Tax=Niabella aurantiaca RepID=UPI00035CA844 rbh
Metallo-beta-lactamase {ECO:0000313|EMBL:AHF14470.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
RNA-metabolising metallo-beta-lactamase; K07576 metallo-beta-lactamase family protein rbh
SCNpilot_expt_500_bf_scaffold_8_29
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(48712..49218)
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDQ7_NIAKG
Thioesterase {ECO:0000313|EMBL:KIC90695.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_8_30
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(49228..49716)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NMP7_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF14468.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein, DUF255
Displaying items 1-30 of 277 in total

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