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SCNpilot_expt_500_bf_scaffold_16

Search features with annotation key words

Displaying items 1-30 of 326 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_16_1
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..127)
DNA (126bp) protein (42aa)
Integrase, catalytic region n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GTQ6_SPHAL
integrase catalytic subunit
Integrase, catalytic region {ECO:0000313|EMBL:ABF52966.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_expt_500_bf_scaffold_16_2
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(234..1028)
DNA (795bp) protein (265aa)
Integrase, catalytic region n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GTQ6_SPHAL
integrase catalytic subunit
Integrase, catalytic region {ECO:0000313|EMBL:ABF52966.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_expt_500_bf_scaffold_16_3
BJP_08E140C01_10KDA_Sphingomonadales_62_47, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1483..2097)
DNA (615bp) protein (205aa)
3,4-dihydroxy-2-butanone 4-phosphate synthase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WBE2_9SPHN
3,4-dihydroxy-2-butanone 4-phosphate synthase
Tax=BJP_08E140C01_10KDA_Sphingomonadales_62_47
SCNpilot_expt_500_bf_scaffold_16_4
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2094..2657)
DNA (564bp) protein (188aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0002EF4027
NADPH-dependent FMN reductase
Tax=BJP_IG2102_Porphyrobacter_62_18
SCNpilot_expt_500_bf_scaffold_16_5
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2660..4156)
DNA (1497bp) protein (499aa)
glycerol-3-phosphate dehydrogenase (EC:1.1.5.3); K00111 glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] rbh
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0002D28958 rbh
Tax=BJP_IG2102_Porphyrobacter_62_18
SCNpilot_expt_500_bf_scaffold_16_6
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4170..5258)
DNA (1089bp) protein (363aa)
Putative membrane protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2FT29_9SPHN rbh
Putative membrane protein {ECO:0000313|EMBL:EJL20255.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_16_7
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5411..6628
DNA (1218bp) protein (406aa)
Major facilitator superfamily MFS_1 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5I9_NOVAD rbh
major facilitator transporter; K08191 MFS transporter, ACS family, hexuronate transporter rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABD26884.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_500_bf_scaffold_16_8
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6702..9023)
DNA (2322bp) protein (774aa)
TonB-denpendent receptor n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD630 rbh
Putative TonB-dependent receptor {ECO:0000313|EMBL:GAO39308.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
TonB-dependent receptor rbh
SCNpilot_expt_500_bf_scaffold_16_9
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9207..11207
DNA (2001bp) protein (667aa)
alpha-glucosidase; K15922 alpha-glucosidase [EC:3.2.1.20] rbh
Glycoside hydrolase, family 31 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5J1_NOVAD rbh
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
SCNpilot_expt_500_bf_scaffold_16_10
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11204..12217
DNA (1014bp) protein (338aa)
LacI family transcriptional regulator n=1 Tax=Blastomonas sp. AAP53 RepID=UPI00030CD0F5 rbh
LacI family transcription regulator; K02529 LacI family transcriptional regulator rbh
Transcriptional regulator, LacI family {ECO:0000313|EMBL:ABD26881.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_500_bf_scaffold_16_11
BJP_08E140C01_10KDA_Sphingomonadales_62_47, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12214..13128
DNA (915bp) protein (305aa)
Aldo/keto reductase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5J3_NOVAD rbh
aldo/keto reductase rbh
Tax=BJP_08E140C01_10KDA_Sphingomonadales_62_47
SCNpilot_expt_500_bf_scaffold_16_12
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13125..14228
DNA (1104bp) protein (368aa)
alkanesulfonate monooxygenase (EC:1.14.14.5); K04091 alkanesulfonate monooxygenase [EC:1.14.14.5] rbh
Alkanesulfonate monooxygenase {ECO:0000313|EMBL:CCA90796.1}; EC=1.14.14.5 {ECO:0000313|EMBL:CCA90796.1};; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
Alkanesulfonate monooxygenase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IES1_9SPHN rbh
SCNpilot_expt_500_bf_scaffold_16_13
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14286..15776
DNA (1491bp) protein (497aa)
glycerol kinase (EC:2.7.1.30); K00864 glycerol kinase [EC:2.7.1.30] rbh
Glycerol kinase {ECO:0000313|EMBL:CCA90798.1}; EC=2.7.1.30 {ECO:0000313|EMBL:CCA90798.1};; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
Glycerol kinase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IES3_9SPHN rbh
SCNpilot_expt_500_bf_scaffold_16_14
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15792..17039
DNA (1248bp) protein (416aa)
Sulfite dehydrogenase (Cytochrome) subunit SorA apoprotein n=1 Tax=Sphingomonas sp. LH128 RepID=J8SGM4_9SPHN rbh
Sulfite dehydrogenase (Cytochrome) subunit SorA apoprotein {ECO:0000313|EMBL:EJU11984.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
oxidoreductase, molybdopterin binding subunit; K07147 rbh
SCNpilot_expt_500_bf_scaffold_16_15
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17036..17416
DNA (381bp) protein (127aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI000287BB3E
Uncharacterized protein {ECO:0000313|EMBL:EZP51347.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_16_16
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17788..20274
DNA (2487bp) protein (829aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0002E4E565 rbh
TonB-dependent receptor-like protein {ECO:0000313|EMBL:KGB53061.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
TonB-dependent receptor plug rbh
SCNpilot_expt_500_bf_scaffold_16_17
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20366..21637
DNA (1272bp) protein (424aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI00036698F7 rbh
Uncharacterized protein {ECO:0000313|EMBL:KGB53060.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_16_18
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21634..23673
DNA (2040bp) protein (680aa)
Glycosyl hydrolase 92 family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WZ96_9SPHN rbh
DNA, contig: SP601 {ECO:0000313|EMBL:GAN11993.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
alpha-1,2-mannosidase rbh
SCNpilot_expt_500_bf_scaffold_16_19
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23785..26316
DNA (2532bp) protein (844aa)
glycoside hydrolase; K05349 beta-glucosidase [EC:3.2.1.21] rbh
Beta-glucosidase n=1 Tax=gamma proteobacterium IMCC3088 RepID=F3KYJ4_9GAMM rbh
Beta-glucosidase {ECO:0000313|EMBL:KGF80900.1}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
SCNpilot_expt_500_bf_scaffold_16_20
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26366..27481)
DNA (1116bp) protein (372aa)
NADPH dehydrogenase n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P6M2_AZOS1 rbh
NADPH dehydrogenase rbh
NADPH dehydrogenase {ECO:0000313|EMBL:BAI76301.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
SCNpilot_expt_500_bf_scaffold_16_21
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27711..28622
DNA (912bp) protein (304aa)
LysR substrate binding domain protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RMA5_9PROT rbh
LysR substrate binding domain protein {ECO:0000313|EMBL:EFH11567.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
LysR family transcripitonal regulator rbh
SCNpilot_expt_500_bf_scaffold_16_22
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28631..29884)
DNA (1254bp) protein (418aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003653148
3-carboxymuconate cyclase-like protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
SCNpilot_expt_500_bf_scaffold_16_23
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29966..30607)
DNA (642bp) protein (214aa)
Cob(II)yrinic acid a,c-diamide reductase (EC:1.16.8.1); K04719 5,6-dimethylbenzimidazole synthase [EC:1.14.99.40]
Putative cob(II)yrinic acid a,c-diamide reductase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A4I8_9SPHN rbh
Putative cob(II)yrinic acid a,c-diamide reductase {ECO:0000313|EMBL:GAD49668.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
SCNpilot_expt_500_bf_scaffold_16_24
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30678..32000)
DNA (1323bp) protein (441aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZC12_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EGD57851.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
molecular chaperone DnaK; K04046 hypothetical chaperone protein
SCNpilot_expt_500_bf_scaffold_16_25
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32002..32340)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G874_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD25949.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_500_bf_scaffold_16_26
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32410..32742)
DNA (333bp) protein (111aa)
ArsR family transcriptional regulator n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B5AC48
ArsR family transcriptional regulator {ECO:0000313|EMBL:EGD59638.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
ArsR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_16_27
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32739..35939)
DNA (3201bp) protein (1067aa)
multidrug transporter AcrB n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B422AD rbh
RND transporter, HAE1/HME family, permease protein {ECO:0000313|EMBL:EGD59637.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
efflux pump inner membrane protein
SCNpilot_expt_500_bf_scaffold_16_28
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35936..36943)
DNA (1008bp) protein (336aa)
RND transporter n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B71E15 rbh
RND family efflux transporter MFP subunit {ECO:0000313|EMBL:EGD59636.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
RND family efflux transporter MFP subunit
SCNpilot_expt_500_bf_scaffold_16_29
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36973..37311)
DNA (339bp) protein (113aa)
sulfurtransferase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B67E65
Uncharacterized protein {ECO:0000313|EMBL:GAO55110.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_16_30
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37478..38806
DNA (1329bp) protein (443aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B63472 rbh
Pyridine nucleotide-disulfide oxidoreductase, putative {ECO:0000313|EMBL:EGD59634.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
Displaying items 1-30 of 326 in total

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