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SCNpilot_expt_500_bf_scaffold_41

Search features with annotation key words

Displaying items 1-30 of 577 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_41_1
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(341..1255)
DNA (915bp) protein (305aa)
Ureidoglycolate lyase {ECO:0000313|EMBL:KJL34541.1}; EC=4.3.2.3 {ECO:0000313|EMBL:KJL34541.1};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase n=1 Tax=Rhodococcus erythropolis RepID=UPI00035C7CAF
fumarylacetoacetate hydrolase family protein
SCNpilot_expt_500_bf_scaffold_41_2
Bacillus cereus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1296..2309)
DNA (1014bp) protein (338aa)
Uncharacterized protein n=1 Tax=Bacillus cereus VD107 RepID=J8JY74_BACCE
Uncharacterized protein {ECO:0000313|EMBL:EJR55760.1}; TaxID=1053229 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.;" source="Bacillus cereus VD107.;"
Taurine catabolism dioxygenase TauD/TfdA
SCNpilot_expt_500_bf_scaffold_41_3
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2565..3959
DNA (1395bp) protein (465aa)
Metabolite MFS transporter n=2 Tax=Sorangium cellulosum RepID=Q4U455_SORCE
Putative transporter {ECO:0000313|EMBL:CAI43924.1}; TaxID=56 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (Polyangium cellulosum).;"
major facilitator transporter
SCNpilot_expt_500_bf_scaffold_41_4
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4134..7067
DNA (2934bp) protein (978aa)
TonB-dependent receptor n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C109 rbh
TonB-dependent receptor-like protein
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCNpilot_expt_500_bf_scaffold_41_5
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7487..8860)
DNA (1374bp) protein (458aa)
major facilitator transporter n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00035F30E9 rbh
DNA, contig: SP630 {ECO:0000313|EMBL:GAN14168.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
putative major facilitator superfamily (MFS) drug efflux transporter
SCNpilot_expt_500_bf_scaffold_41_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8946..9155)
DNA (210bp) protein (70aa)
Uncharacterized protein {ECO:0000313|EMBL:GAO56594.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
SCNpilot_expt_500_bf_scaffold_41_7
Sphingopyxis macrogoltabida, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9215..12076)
DNA (2862bp) protein (954aa)
FumJ n=1 Tax=Sphingopyxis macrogoltabida RepID=D2D3B1_SPHMC rbh
FumJ {ECO:0000313|EMBL:ACS27062.1}; TaxID=33050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis macrogoltabida (Sphingomonas macrogoltabidus).;"
TonB-dependent receptor
SCNpilot_expt_500_bf_scaffold_41_8
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12112..13422)
DNA (1311bp) protein (437aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00035E1A8D rbh
Citrate transporter {ECO:0000313|EMBL:GAM02943.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
cita3; MFS family transporter
SCNpilot_expt_500_bf_scaffold_41_9
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13419..14291)
DNA (873bp) protein (291aa)
molybdenum ABC transporter substrate-binding protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B73EEA rbh
Putative ABC transporter substrate-binding protein {ECO:0000313|EMBL:GAM02944.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
extracellular solute-binding protein; K02020 molybdate transport system substrate-binding protein
SCNpilot_expt_500_bf_scaffold_41_10
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14459..15673
DNA (1215bp) protein (405aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000382B615 rbh
DNA, contig: SP655 {ECO:0000313|EMBL:GAN15302.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
dctA; C4-dicarboxylate transport protein
SCNpilot_expt_500_bf_scaffold_41_11
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15663..16580)
DNA (918bp) protein (306aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00035E7493 rbh
DNA, contig: SP655 {ECO:0000313|EMBL:GAN15303.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
transcriptional regulator rbh
SCNpilot_expt_500_bf_scaffold_41_12
unknown

Not on your lists

comp(16903..17307)
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B41716
SCNpilot_expt_500_bf_scaffold_41_13
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17356..19371
DNA (2016bp) protein (672aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B5B8D5 rbh
Gram-negative bacterial tonB protein {ECO:0000313|EMBL:EJL33738.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
SCNpilot_expt_500_bf_scaffold_41_14
unknown

Not on your lists

comp(19388..19657)
DNA (270bp) protein (90aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_41_15
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19873..22254)
DNA (2382bp) protein (794aa)
TonB-dependent receptor, plug n=2 Tax=Novosphingobium nitrogenifigens RepID=F1Z762_9SPHN rbh
TonB-dependent receptor, plug {ECO:0000313|EMBL:EGD59568.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
TonB-dependent receptor, plug
SCNpilot_expt_500_bf_scaffold_41_16
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22545..24119
DNA (1575bp) protein (525aa)
Putative signal transduction histidine kinase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z764_9SPHN rbh
Putative signal transduction histidine kinase {ECO:0000313|EMBL:EGD59570.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
signal transduction histidine kinase
SCNpilot_expt_500_bf_scaffold_41_17
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24116..24745
DNA (630bp) protein (210aa)
Two component LuxR family transcriptional regulator n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z765_9SPHN
Two component LuxR family transcriptional regulator {ECO:0000313|EMBL:EGD59571.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
two component LuxR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_41_18
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24878..25903
DNA (1026bp) protein (342aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8W2V7_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EJU14026.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
YVTN family beta-propeller repeat protein
SCNpilot_expt_500_bf_scaffold_41_19
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25918..26643
DNA (726bp) protein (242aa)
Acid phosphatase {ECO:0000256|PIRNR:PIRNR000897}; EC=3.1.3.2 {ECO:0000256|PIRNR:PIRNR000897};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
PA-phosphatase-like protein; K09474 acid phosphatase (class A) [EC:3.1.3.2]
PA-phosphatase-like protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VTP7_9SPHN
SCNpilot_expt_500_bf_scaffold_41_20
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26812..28722
DNA (1911bp) protein (637aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
histidine kinase n=1 Tax=Fischerella sp. PCC 9339 RepID=UPI0002EA98BE rbh
integral membrane sensor hybrid histidine kinase rbh
SCNpilot_expt_500_bf_scaffold_41_21
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28719..30917
DNA (2199bp) protein (733aa)
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6EZA8_SPHCR rbh
response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) rbh
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) {ECO:0000313|EMBL:AEG50201.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_expt_500_bf_scaffold_41_22
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31083..31391
DNA (309bp) protein (103aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z3T5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD60741.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
SCNpilot_expt_500_bf_scaffold_41_23
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31388..31756
DNA (369bp) protein (123aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z3T6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD60740.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_41_24
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31753..33729
DNA (1977bp) protein (659aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
CheA signal transduction histidine kinase; K03407 two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z3T7_9SPHN rbh
SCNpilot_expt_500_bf_scaffold_41_25
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33726..34199
DNA (474bp) protein (158aa)
Chemotaxis protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z3T8_9SPHN
Chemotaxis protein {ECO:0000313|EMBL:EGD60738.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
Positive regulator of CheA protein activity (CheW); K03408 purine-binding chemotaxis protein CheW
SCNpilot_expt_500_bf_scaffold_41_26
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34254..36065
DNA (1812bp) protein (604aa)
Putative methyl-accepting chemotaxis protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z3T9_9SPHN rbh
Putative methyl-accepting chemotaxis protein {ECO:0000313|EMBL:EGD60737.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
mcrA; chemoreceptor of MCP family; K03406 methyl-accepting chemotaxis protein rbh
SCNpilot_expt_500_bf_scaffold_41_27
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36062..36559
DNA (498bp) protein (166aa)
CheW protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z3U0_9SPHN
CheW protein {ECO:0000313|EMBL:EGD60736.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
cheW3; chemotaxis signal transduction protein; K03408 purine-binding chemotaxis protein CheW
SCNpilot_expt_500_bf_scaffold_41_28
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36556..37434
DNA (879bp) protein (293aa)
Chemotaxis protein methyltransferase {ECO:0000256|PIRNR:PIRNR000410}; EC=2.1.1.80 {ECO:0000256|PIRNR:PIRNR000410};; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
cheR; chemotaxis methyltransferase; K00575 chemotaxis protein methyltransferase CheR [EC:2.1.1.80] rbh
Chemotaxis protein methyltransferase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z3U1_9SPHN rbh
SCNpilot_expt_500_bf_scaffold_41_29
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37440..38510
DNA (1071bp) protein (357aa)
Chemotaxis response regulator protein-glutamate methylesterase {ECO:0000256|HAMAP-Rule:MF_00099}; EC=3.1.1.61 {ECO:0000256|HAMAP-Rule:MF_00099};; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
cheB; chemotaxis response regulator protein-glutamate methylesterase (EC:3.1.1.61); K03412 two-component system, chemotaxis family, response regulator CheB [EC:3.1.1.61]
Chemotaxis response regulator protein-glutamate methylesterase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z3U2_9SPHN rbh
SCNpilot_expt_500_bf_scaffold_41_30
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38521..40293
DNA (1773bp) protein (591aa)
Methyl-accepting chemotaxis protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z3U3_9SPHN rbh
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:EGD60733.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
hypothetical protein
Displaying items 1-30 of 577 in total

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