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SCNpilot_expt_500_bf_scaffold_69

Search features with annotation key words

Displaying items 1-30 of 147 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_69_1
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(649..2775)
DNA (2127bp) protein (709aa)
TonB-denpendent receptor n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B650C7 rbh
TonB-dependent receptor-like protein rbh
TonB-dependent receptor-like protein {ECO:0000313|EMBL:BAK65761.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_500_bf_scaffold_69_2
Sphingobium sp. ba1, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2877..3632
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Sphingomonas wittichii RepID=UPI0002E76DC6
TonB-dependent receptor-like protein {ECO:0000313|EMBL:KFL48402.1}; TaxID=1522072 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. ba1.;"
TonB-dependent siderophore receptor; K02014 iron complex outermembrane recepter protein
SCNpilot_expt_500_bf_scaffold_69_3
Sphingobium sp. ba1, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3637..3948
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9KZP8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KFL48401.1}; TaxID=1522072 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. ba1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_69_4
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3945..5519
DNA (1575bp) protein (525aa)
PepSY-associated TM helix domain-containing protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C1U0_9SPHN rbh
PepSY-associated TM helix domain-containing protein {ECO:0000313|EMBL:EIZ77420.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
PepSY-associated TM helix domain-containing protein rbh
SCNpilot_expt_500_bf_scaffold_69_5
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5516..5785
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WB87_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EIZ77421.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_69_6
Pseudomonas sp. GM21, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6086..7498
DNA (1413bp) protein (471aa)
ISPsy6 transposase n=5 Tax=Pseudomonas aeruginosa RepID=K1BDY6_PSEAI rbh
Transposase {ECO:0000313|EMBL:EJM11726.1}; TaxID=1144325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM21.;"
transposase IS4
SCNpilot_expt_500_bf_scaffold_69_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7704..8423)
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B46851 rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO53161.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_69_8
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8395..8769)
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4B4A6
Uncharacterized protein {ECO:0000313|EMBL:KEO86770.1}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. JL475.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_69_9
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9006..9935)
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D866_BRAJP rbh
hypothetical protein; K07088 rbh
Uncharacterized protein {ECO:0000313|EMBL:BAL12545.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
SCNpilot_expt_500_bf_scaffold_69_10
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10167..11594
DNA (1428bp) protein (476aa)
hypothetical protein n=1 Tax=Blastomonas sp. AAP53 RepID=UPI0002DEA036 rbh
Uncharacterized protein {ECO:0000313|EMBL:KHL24574.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
GAF sensor-containing diguanylate cyclase rbh
SCNpilot_expt_500_bf_scaffold_69_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11537..12199
DNA (663bp) protein (221aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZDK8_9SPHN
Histone acetyltransferase HPA2 and related acetyltransferases {ECO:0000313|EMBL:GAO56357.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_69_12
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12209..13978)
DNA (1770bp) protein (590aa)
Diguanylate cyclase/phosphodiesterase domain 2 (EAL) n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82TH8_NITEU rbh
diguanylate cyclase/phosphodiesterase rbh
Diguanylate cyclase/phosphodiesterase domain 2 (EAL) {ECO:0000313|EMBL:CAD85820.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
SCNpilot_expt_500_bf_scaffold_69_13
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14255..17023)
DNA (2769bp) protein (923aa)
TonB-denpendent receptor n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003A13CB2 rbh
Uncharacterized protein {ECO:0000313|EMBL:AHE55667.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
TonB-dependent receptor rbh
SCNpilot_expt_500_bf_scaffold_69_14
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17276..18592
DNA (1317bp) protein (439aa)
glucarate transporter n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003B3147C
D-glucarate permease {ECO:0000313|EMBL:CCW18821.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
d-galactonate transporter
SCNpilot_expt_500_bf_scaffold_69_15
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18589..20409
DNA (1821bp) protein (607aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002630283
Uncharacterized protein {ECO:0000313|EMBL:CCW18820.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_69_16
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20406..21293)
DNA (888bp) protein (296aa)
Transcriptional regulatory protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MTW8_9SPHN
Transcriptional regulatory protein {ECO:0000313|EMBL:CCW18818.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
transcriptional regulator, LysR family rbh
SCNpilot_expt_500_bf_scaffold_69_17
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21313..22245)
DNA (933bp) protein (311aa)
Probable 5-dehydro-4-deoxyglucarate dehydratase {ECO:0000256|HAMAP-Rule:MF_00694}; EC=4.2.1.41 {ECO:0000256|HAMAP-Rule:MF_00694};; 5-keto-4-deoxy-glucarate dehydratase {ECO:0000256|HAMAP-Rule:MF_00694}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
5-dehydro-4-deoxyglucarate dehydratase; K01707 5-dehydro-4-deoxyglucarate dehydratase [EC:4.2.1.41]
Probable 5-dehydro-4-deoxyglucarate dehydratase n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MT20_9SPHN
SCNpilot_expt_500_bf_scaffold_69_18
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22474..23475
DNA (1002bp) protein (334aa)
peptidase T n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B40F10
Peptidase t2 asparaginase 2 {ECO:0000313|EMBL:EIL93760.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
peptidase S51 dipeptidase E
SCNpilot_expt_500_bf_scaffold_69_19
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23522..23980
DNA (459bp) protein (153aa)
GreA/GreB family elongation factor n=2 Tax=Novosphingobium nitrogenifigens RepID=F1ZC11_9SPHN
GreA/GreB family elongation factor {ECO:0000313|EMBL:EGD57852.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
GreA/GreB family elongation factor
SCNpilot_expt_500_bf_scaffold_69_20
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24076..26106
DNA (2031bp) protein (677aa)
UPI0003D6332B related cluster n=1 Tax=unknown RepID=UPI0003D6332B rbh
Carbon starvation protein A {ECO:0000313|EMBL:ETI64491.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
cstA; carbon starvation protein CstA; K06200 carbon starvation protein rbh
SCNpilot_expt_500_bf_scaffold_69_21
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26103..26279
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0J0P2_9SPHN
Putative small protein yjiX {ECO:0000313|EMBL:EZP73480.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_69_22
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26281..26607)
DNA (327bp) protein (109aa)
ArsR family transcriptional regulator n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B5AC48
ArsR family transcriptional regulator {ECO:0000313|EMBL:EGD59638.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
ArsR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_69_23
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26656..27027)
DNA (372bp) protein (124aa)
hypothetical protein n=1 Tax=Novosphingobium nitrogenifigens RepID=UPI0002F35025
ArsR family transcriptional regulator
Tax=BJP_IG2102_Porphyrobacter_62_18
SCNpilot_expt_500_bf_scaffold_69_24
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27425..28282)
DNA (858bp) protein (286aa)
Pantothenate synthetase {ECO:0000256|HAMAP-Rule:MF_00158}; Short=PS {ECO:0000256|HAMAP-Rule:MF_00158};; EC=6.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00158};; Pantoate--beta-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00158}; Pantoate-activating enzyme {ECO:0000256|HAMAP-Rule:MF_00158}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
pantoate--beta-alanine ligase (EC:6.3.2.1); K01918 pantoate--beta-alanine ligase [EC:6.3.2.1] rbh
Pantothenate synthetase n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C8D0_9SPHN rbh
SCNpilot_expt_500_bf_scaffold_69_25
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28396..29208
DNA (813bp) protein (271aa)
ATPase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z5B3_9SPHN rbh
Chromosome partitioning ATPase-like protein {ECO:0000313|EMBL:KHS46869.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
chromosome partitioning ATPase-like; K03496 chromosome partitioning protein rbh
SCNpilot_expt_500_bf_scaffold_69_26
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29210..29500
DNA (291bp) protein (97aa)
Heat shock protein DnaJ-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G321_NOVAD
heat shock protein DnaJ-like protein
Heat shock protein DnaJ-like protein {ECO:0000313|EMBL:ABD27752.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_500_bf_scaffold_69_27
Sphingobium lucknowense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29497..30963
DNA (1467bp) protein (489aa)
manB; phosphomannomutase (EC:5.4.2.8); K01840 phosphomannomutase [EC:5.4.2.8]
Phosphomannomutase n=1 Tax=Sphingobium sp. HDIP04 RepID=T0G819_9SPHN
Phosphomannomutase {ECO:0000313|EMBL:KER36450.1}; TaxID=1450518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lucknowense F2.;"
SCNpilot_expt_500_bf_scaffold_69_28
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30960..33392
DNA (2433bp) protein (811aa)
DEAD/DEAH box helicase-like protein; K03724 ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-] rbh
Helicase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HZH2_9SPHN rbh
Helicase {ECO:0000313|EMBL:EQB18492.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
SCNpilot_expt_500_bf_scaffold_69_29
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33459..33908)
DNA (450bp) protein (150aa)
Biopolymer transport protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2FX60_9SPHN
Biopolymer transport protein {ECO:0000313|EMBL:EJL21805.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
biopolymer transport exbD transmembrane protein; K03559 biopolymer transport protein ExbD
SCNpilot_expt_500_bf_scaffold_69_30
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33938..34474)
DNA (537bp) protein (179aa)
Biopolymer transport protein ExbD n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YKF1_9SPHN
Biopolymer transport protein ExbD {ECO:0000313|EMBL:GAD49030.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
biopolymer transport ExbD protein; K03559 biopolymer transport protein ExbD
Displaying items 1-30 of 147 in total

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