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SCNpilot_expt_500_bf_scaffold_719

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_719_1
unknown

Not on your lists

comp(2..70)
DNA (69bp) protein (23aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_719_2
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

171..710
DNA (540bp) protein (180aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8S7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD59330.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_719_3
Thalassospira profundimaris, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(734..1036)
DNA (303bp) protein (101aa)
Helix-turn-helix domain-containing protein n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2LN66_9PROT
Helix-turn-helix domain-containing protein {ECO:0000313|EMBL:EKF06377.1}; TaxID=1177928 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira profundimaris WP0211.;"
helix-turn-helix domain-containing protein
SCNpilot_expt_500_bf_scaffold_719_4
unknown

Not on your lists

comp(1189..1425)
DNA (237bp) protein (79aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_719_5
unknown

Not on your lists

comp(1469..1735)
DNA (267bp) protein (89aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_719_6
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1891..2220
DNA (330bp) protein (110aa)
Single-stranded DNA-binding protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z4N0_9SPHN
Single-stranded DNA-binding protein {ECO:0000256|PIRNR:PIRNR002070}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
single-strand binding protein/primosomal replication protein n
SCNpilot_expt_500_bf_scaffold_719_7
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2272..2601
DNA (330bp) protein (110aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8T1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD59326.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_719_8
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2669..3352)
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1ML66_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:CCW16357.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_719_9
unknown

Not on your lists

comp(3785..4252)
DNA (468bp) protein (156aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_719_10
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5019..5408)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GN47_9SPHN
PilT protein {ECO:0000313|EMBL:KFG90829.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
PilT protein
SCNpilot_expt_500_bf_scaffold_719_11
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5395..5667)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GQ42_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB02108.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
AbrB family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_719_12
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5967..6221
DNA (255bp) protein (85aa)
Plasmid stabilization protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8T4_9SPHN
Plasmid stabilization protein {ECO:0000313|EMBL:EGD59323.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
parD; plasmid stabilization protein
SCNpilot_expt_500_bf_scaffold_719_13
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6218..6535
DNA (318bp) protein (106aa)
Plasmid stabilization protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z4M3_9SPHN
Plasmid stabilization protein {ECO:0000313|EMBL:EGD60434.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
putative plasmid stabilization protein
SCNpilot_expt_500_bf_scaffold_719_14
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6636..7217
DNA (582bp) protein (194aa)
Site-specific recombinase, phage integrase family protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2NBN0_ERYLH
Tyrosine recombinase XerC {ECO:0000313|EMBL:AKH44025.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
site-specific recombinase, phage integrase
SCNpilot_expt_500_bf_scaffold_719_15
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7183..7620
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HGX5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB12262.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
transposase
SCNpilot_expt_500_bf_scaffold_719_16
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7770..9284
DNA (1515bp) protein (505aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4RX59_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH48131.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_expt_500_bf_scaffold_719_17
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9361..12021
DNA (2661bp) protein (887aa)
TonB-dependent receptor n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V9G7_SPHWW rbh
Uncharacterized protein {ECO:0000313|EMBL:AHE54286.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
TonB-dependent receptor rbh
SCNpilot_expt_500_bf_scaffold_719_18
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12244..12843
DNA (600bp) protein (200aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EBQ2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EHJ61334.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_719_19
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12847..13149
DNA (303bp) protein (101aa)
Type IV secretory pathway, VirB2 component (Pilin) n=1 Tax=Novosphingobium sp. AP12 RepID=J2FUE1_9SPHN
TrbC/VIRB2 family protein {ECO:0000313|EMBL:AKH43939.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein; K03197 type IV secretion system protein VirB2
SCNpilot_expt_500_bf_scaffold_719_20
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13156..13437
DNA (282bp) protein (94aa)
Type VI secretion protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HZE4_9SPHN
Type VI secretion protein {ECO:0000313|EMBL:EQB17428.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
type IV secretion system protein VirB3; K03198 type IV secretion system protein VirB3
SCNpilot_expt_500_bf_scaffold_719_21
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13451..15862
DNA (2412bp) protein (804aa)
Type VI secretion protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0J660_9SPHN rbh
Type VI secretion protein {ECO:0000313|EMBL:EQB17429.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
type IV secretion system protein VirB4; K03199 type IV secretion system protein VirB4 rbh
SCNpilot_expt_500_bf_scaffold_719_22
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15859..17085
DNA (1227bp) protein (409aa)
Type IV secretion system protein VirB6 n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IJ31_9SPHN rbh
type IV secretion system protein VirB6; K03201 type IV secretion system protein VirB6 rbh
Type IV secretion system protein VirB6 {ECO:0000313|EMBL:CCA91657.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_expt_500_bf_scaffold_719_23
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17082..18059
DNA (978bp) protein (326aa)
Type IV secretion system protein VirB9 n=1 Tax=Sphingomonas sp. LH128 RepID=J8VU42_9SPHN
Type IV secretion system protein VirB9 {ECO:0000313|EMBL:EZP81388.1}; Flags: Precursor;; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
type IV secretion system protein B9; K03204 type IV secretion system protein VirB9
SCNpilot_expt_500_bf_scaffold_719_24
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18062..19162
DNA (1101bp) protein (367aa)
Type IV secretory pathway, VirB10 component n=1 Tax=Novosphingobium sp. AP12 RepID=J2FUE7_9SPHN rbh
Scaffold2, whole genome shotgun sequence {ECO:0000313|EMBL:KIS33837.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
type IV secretion system protein B10; K03195 type IV secretion system protein VirB10 rbh
SCNpilot_expt_500_bf_scaffold_719_25
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19159..20127
DNA (969bp) protein (323aa)
Type IV secretion system protein VirB11 n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WI78_9SPHN rbh
Type IV secretion system protein VirB11 {ECO:0000313|EMBL:EIZ79918.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
type IV secretion system protein VirB11; K03196 type IV secretion system protein VirB11 rbh
SCNpilot_expt_500_bf_scaffold_719_26
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20163..20807
DNA (645bp) protein (215aa)
XRE family transcriptional regulator n=1 Tax=Sphingobium baderi LL03 RepID=T0G190_9SPHN
Phosphate regulon transcriptional regulatory protein PhoB {ECO:0000313|EMBL:AKH43944.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
SCNpilot_expt_500_bf_scaffold_719_27
Sphingobium lucknowense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20990..21238
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GBH4_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:KER35075.1}; TaxID=1450518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lucknowense F2.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_719_28
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21300..21743
DNA (444bp) protein (148aa)
transposase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B3ADF5
Transposase {ECO:0000313|EMBL:KHL24982.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_719_29
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21740..22093
DNA (354bp) protein (118aa)
transposase ISAfe4 n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B707D1
Transposase and inactivated derivative {ECO:0000313|EMBL:EAT07217.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
IS66 Orf2 like; K07484 transposase
SCNpilot_expt_500_bf_scaffold_719_30
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22130..23332
DNA (1203bp) protein (401aa)
transposase IS66 n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4F4D9 rbh
Transposase and inactivated derivative {ECO:0000313|EMBL:EAT07218.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
transposase
Displaying 30 items

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