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SCNpilot_expt_500_bf_scaffold_9

Search features with annotation key words

Displaying items 1-30 of 359 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_9_1
Microcoleus vaginatus, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(2..4618)
DNA (4617bp) protein (1539aa)
Amino acid adenylation domain protein {ECO:0000313|EMBL:EGK84886.1}; EC=5.1.1.3 {ECO:0000313|EMBL:EGK84886.1};; EC=6.2.1.20 {ECO:0000313|EMBL:EGK84886.1};; TaxID=756067 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus vaginatus FGP-2.;"
amino acid adenylation protein (EC:5.1.1.3 6.2.1.20)
Amino acid adenylation domain protein n=1 Tax=Microcoleus vaginatus FGP-2 RepID=F5UM67_9CYAN
SCNpilot_expt_500_bf_scaffold_9_2
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4618..12627)
DNA (8010bp) protein (2670aa)
Putative non ribosomal peptide synthetase protein n=1 Tax=Ralstonia solanacearum CMR15 RepID=D8NH70_RALSL rbh
Putative non ribosomal peptide synthetase protein {ECO:0000313|EMBL:CBJ40244.1}; TaxID=859655 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum CMR15.;"
putative non ribosomal peptide synthetase protein rbh
SCNpilot_expt_500_bf_scaffold_9_3
Desulfotomaculum acetoxidans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12708..13496)
DNA (789bp) protein (263aa)
oleoyl-ACP hydrolase (EC:3.1.2.14)
Oleoyl-(Acyl-carrier-protein) hydrolase {ECO:0000313|EMBL:ACV63461.1}; EC=3.1.2.14 {ECO:0000313|EMBL:ACV63461.1};; TaxID=485916 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM; B-1644).;"
Oleoyl-(Acyl-carrier-protein) hydrolase n=1 Tax=Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) RepID=C8W165_DESAS
SCNpilot_expt_500_bf_scaffold_9_4
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(13631..13843)
DNA (213bp) protein (71aa)
antibiotic synthesis protein MbtH n=1 Tax=Fischerella muscicola RepID=UPI0002E9C2D9
hypothetical protein
Antibiotic synthesis protein MbtH {ECO:0000313|EMBL:KIJ75058.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
SCNpilot_expt_500_bf_scaffold_9_5

Not on your lists

comp(13873..14211)
DNA (339bp) protein (113aa)
MbtH-like protein n=1 Tax=uncultured bacterium esnapd14 RepID=S5UCP7_9BACT
MbtH-like protein {ECO:0000313|EMBL:AGS49692.1}; TaxID=1366594 species="Bacteria; environmental samples.;" source="uncultured bacterium esnapd14.;"
MbtH domain-containing protein
SCNpilot_expt_500_bf_scaffold_9_6
Cyanothece sp. ATCC 51142, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(14231..14527)
DNA (297bp) protein (99aa)
Uncharacterized protein n=2 Tax=Cyanothece RepID=B1WWS5_CYAA5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB52394.1}; TaxID=43989 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanothece.;" source="Cyanothece sp. (strain ATCC 51142).;"
SCNpilot_expt_500_bf_scaffold_9_7
Leptolyngbya sp. PCC 7375, Leptolyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(14539..15321)
DNA (783bp) protein (261aa)
ABC-type polysaccharide/polyol phosphate export system, permease component n=1 Tax=Leptolyngbya sp. PCC 7375 RepID=K9EJA4_9CYAN
ABC-type polysaccharide/polyol phosphate export system, permease component {ECO:0000313|EMBL:EKU97309.1}; TaxID=102129 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Leptolyngbya.;" source="Leptolyngbya sp. PCC 7375.;"
ABC transporter
SCNpilot_expt_500_bf_scaffold_9_8
Oceanithermus profundus, Oceanithermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(15314..16231)
DNA (918bp) protein (306aa)
ABC transporter related protein n=1 Tax=Oceanithermus profundus (strain DSM 14977 / NBRC 100410 / VKM B-2274 / 506) RepID=E4U6X6_OCEP5 rbh
ABC transporter; K09687 antibiotic transport system ATP-binding protein rbh
ABC transporter related protein {ECO:0000313|EMBL:ADR35979.1}; TaxID=670487 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Oceanithermus.;" source="Oceanithermus profundus (strain DSM 14977 / NBRC 100410 / VKM B-2274 /; 506).;"
SCNpilot_expt_500_bf_scaffold_9_9
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17182..18621
DNA (1440bp) protein (480aa)
Exodeoxyribonuclease I {ECO:0000256|PIRNR:PIRNR000977}; EC=3.1.11.1 {ECO:0000256|PIRNR:PIRNR000977};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
exonuclease I (EC:3.1.11.1)
Exonuclease I n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VNN0_9GAMM
SCNpilot_expt_500_bf_scaffold_9_10
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18784..19467
DNA (684bp) protein (228aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0003128FE4
Uncharacterized protein {ECO:0000313|EMBL:AIF47912.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
TIGR02453 family protein
SCNpilot_expt_500_bf_scaffold_9_11
Streptomyces sp. C, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19711..20400)
DNA (690bp) protein (230aa)
Predicted protein n=1 Tax=Streptomyces sp. C RepID=D9VN66_9ACTO
Predicted protein {ECO:0000313|EMBL:EFL13572.1}; TaxID=253839 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. C.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_9_12
Methylobacter tundripaludum, Methylobacter, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20525..21358)
DNA (834bp) protein (278aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; Flags: Precursor;; TaxID=697282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylobacter.;" source="Methylobacter tundripaludum SV96.;"
PpiC-type peptidyl-prolyl cis-trans isomerase; K03769 peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000374E688
SCNpilot_expt_500_bf_scaffold_9_13
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21371..21637)
DNA (267bp) protein (89aa)
BolA protein n=2 Tax=Xanthomonas RepID=V7ZBR7_9XANT
hypothetical protein; K05527 BolA protein
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
SCNpilot_expt_500_bf_scaffold_9_14
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21634..21933)
DNA (300bp) protein (100aa)
YciI enzymatic domain-containing protein n=1 Tax=Xanthomonas sp. SHU199 RepID=UPI00037BBBDD
BolA family transcriptional regulator {ECO:0000313|EMBL:AJC47773.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
hypothetical protein; K09780 hypothetical protein
SCNpilot_expt_500_bf_scaffold_9_15
unknown

Not on your lists

comp(22106..23035)
DNA (930bp) protein (310aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_9_16
unknown

Not on your lists

comp(23032..24177)
DNA (1146bp) protein (382aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_9_17
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24183..25739)
DNA (1557bp) protein (519aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Lysine--tRNA ligase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VSQ3_9GAMM rbh
lysyl-tRNA synthetase (class II)
SCNpilot_expt_500_bf_scaffold_9_18
Pseudogymnoascus pannorum, Pseudogymnoascus, Leotiomycetes, Ascomycota, Fungi

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comp(25789..26415)
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=uncultured Thiohalocapsa sp. PB-PSB1 RepID=V4J561_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KFY32155.1}; TaxID=1420906 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Leotiomycetes; Leotiomycetes incertae sedis; Pseudeurotiaceae; Pseudogymnoascus.;" source="Pseudogymnoascus pannorum VKM F-4281 (FW-2241).;"
SCNpilot_expt_500_bf_scaffold_9_19
Ectocarpus siliculosus, Ectocarpus, Ectocarpales, Phaeophyceae, Eukaryota

Not on your lists

comp(26463..27542)
DNA (1080bp) protein (360aa)
Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus RepID=D7FQ25_ECTSI
Similar to ankyrin 2,3/unc44 {ECO:0000313|EMBL:CBJ48357.1}; TaxID=2880 species="Eukaryota; Stramenopiles; PX clade; Phaeophyceae; Ectocarpales; Ectocarpaceae; Ectocarpus.;" source="Ectocarpus siliculosus (Brown alga).;"
similar to ankyrin 2,3/unc44
SCNpilot_expt_500_bf_scaffold_9_20
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27570..28661)
DNA (1092bp) protein (364aa)
Peptide chain release factor 2 n=1 Tax=Rhodanobacter denitrificans RepID=M4NDJ7_9GAMM
bacterial peptide chain release factor 2 (bRF-2)
Peptide chain release factor 2 {ECO:0000256|HAMAP-Rule:MF_00094, ECO:0000256|SAAS:SAAS00020438}; Short=RF-2 {ECO:0000256|HAMAP-Rule:MF_00094};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_9_21
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28773..30509)
DNA (1737bp) protein (579aa)
single-stranded-DNA-specific exonuclease RecJ; K07462 single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036A53B8 rbh
SsDNA exonuclease RecJ {ECO:0000313|EMBL:AHX12968.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
SCNpilot_expt_500_bf_scaffold_9_22
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30513..31457)
DNA (945bp) protein (315aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036048FF rbh
Uncharacterized protein {ECO:0000313|EMBL:KFN49999.1}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
rpfE; regulatory protein RpfE
SCNpilot_expt_500_bf_scaffold_9_23
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31494..31970)
DNA (477bp) protein (159aa)
transcription elongation factor GreA n=1 Tax=Rudaea cellulosilytica RepID=UPI0003603984
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
transcription elongation factor GreA; K03624 transcription elongation factor GreA
SCNpilot_expt_500_bf_scaffold_9_24
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31967..35134)
DNA (3168bp) protein (1056aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
carB; carbamoyl phosphate synthase large subunit (EC:6.3.5.5); K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
carbamoyl phosphate synthase large subunit n=1 Tax=Rudaea cellulosilytica RepID=UPI00035D0580 rbh
SCNpilot_expt_500_bf_scaffold_9_25
unknown

Not on your lists

comp(35118..35456)
DNA (339bp) protein (113aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_9_26
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35465..36604)
DNA (1140bp) protein (380aa)
carbamoyl-phosphate synthase small subunit; K01956 carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB; 13370) (Acetobacter aurantius).;"
carbamoyl phosphate synthase small subunit n=1 Tax=Rudaea cellulosilytica RepID=UPI00035C78E4
SCNpilot_expt_500_bf_scaffold_9_27
unknown

Not on your lists

36854..37177
DNA (324bp) protein (108aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_9_28

Not on your lists

comp(37378..38190)
DNA (813bp) protein (271aa)
dihydrodipicolinate reductase; K00215 dihydrodipicolinate reductase [EC:1.3.1.26]
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036A95CB rbh
Dihydrodipicolinate reductase {ECO:0000313|EMBL:EQD45153.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
SCNpilot_expt_500_bf_scaffold_9_29
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38437..40425)
DNA (1989bp) protein (663aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037E30A2 rbh
short-chain dehydrogenase/reductase sdr protein rbh
Tax=BJP_08E140C01_Xanthomonadales_64_42
SCNpilot_expt_500_bf_scaffold_9_30
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40734..40991
DNA (258bp) protein (86aa)
acyl-CoA-binding protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036EED3F
acyl-CoA-binding protein
Tax=GWF1_Xanthomonadales_69_6_curated
Displaying items 1-30 of 359 in total

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