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SCNpilot_expt_500_bf_scaffold_97

Search features with annotation key words

Displaying items 1-30 of 86 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_97_1
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(100..1311)
DNA (1212bp) protein (404aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02007}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
tyrosyl-tRNA synthetase (EC:6.1.1.1)
tyrosyl-tRNA synthetase n=1 Tax=Rudaea cellulosilytica RepID=UPI00036744C9 rbh
SCNpilot_expt_500_bf_scaffold_97_2
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1512..2984
DNA (1473bp) protein (491aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035FF8C9 rbh
Peptidase M23 {ECO:0000313|EMBL:GAN45193.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
metalloendopeptidase-like membrane protein
SCNpilot_expt_500_bf_scaffold_97_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2992..4107
DNA (1116bp) protein (372aa)
Anhydro-N-acetylmuramic acid kinase {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085893}; EC=2.7.1.170 {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085888};; AnhMurNAc kinase {ECO:0000256|HAMAP-Rule:MF_01270}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Anhydro-N-acetylmuramic acid kinase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBX3_9GAMM
molecular chaperone
SCNpilot_expt_500_bf_scaffold_97_4
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4092..4403)
DNA (312bp) protein (104aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003477F13
Uncharacterized protein {ECO:0000313|EMBL:GAN45191.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_97_5
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4472..5809)
DNA (1338bp) protein (446aa)
Major facilitator superfamily MFS_1 n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0K5H0_STEMA rbh
major facilitator superfamily protein; K08218 MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:AEM49658.1}; TaxID=868597 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia JV3.;"
SCNpilot_expt_500_bf_scaffold_97_6
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5806..6585)
DNA (780bp) protein (260aa)
exodeoxyribonuclease III; K01142 exodeoxyribonuclease III [EC:3.1.11.2] rbh
Exodeoxyribonuclease III id=2536389 bin=GWF1_Xanthomonadales_69_6 species=Frateuria aurantia genus=Frateuria taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria rbh
Tax=GWF1_Xanthomonadales_69_6_curated
SCNpilot_expt_500_bf_scaffold_97_7
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6659..7714)
DNA (1056bp) protein (352aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036AA704 rbh
Uncharacterized protein {ECO:0000313|EMBL:KFN51054.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
RND family efflux transporter MFP subunit
SCNpilot_expt_500_bf_scaffold_97_8
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7737..10835)
DNA (3099bp) protein (1033aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035CFFBF rbh
Uncharacterized protein {ECO:0000313|EMBL:KFN51055.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
AcrB/AcrD/AcrF family protein rbh
SCNpilot_expt_500_bf_scaffold_97_9
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11115..12239
DNA (1125bp) protein (375aa)
Putative helix-turn-helix-domain containing protein, AraC type n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8LAE6_9GAMM rbh
Putative helix-turn-helix-domain containing protein, AraC type {ECO:0000313|EMBL:EED39273.1}; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. SKA14.;"
AraC family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_97_10
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12222..12872)
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Caulobacter crescentus OR37 RepID=R0EHN5_CAUCE
Uncharacterized protein {ECO:0000313|EMBL:AKC85770.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_97_11
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12993..13790)
DNA (798bp) protein (266aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000381C8DA rbh
Uncharacterized protein {ECO:0000313|EMBL:KFN42122.1}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
two component transcriptional regulator, LytTR family
SCNpilot_expt_500_bf_scaffold_97_12
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13787..14887)
DNA (1101bp) protein (367aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000376DAB0 rbh
Histidine kinase {ECO:0000313|EMBL:EYR68935.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_97_13
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14996..15640
DNA (645bp) protein (215aa)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216328}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216337};; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
orotate phosphoribosyltransferase n=1 Tax=Dyella ginsengisoli RepID=UPI00034B9782
orotate phosphoribosyltransferase
SCNpilot_expt_500_bf_scaffold_97_14
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15707..16366
DNA (660bp) protein (220aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036FF806
ABC transporter ATPase {ECO:0000313|EMBL:GAN45187.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_97_15
unknown

Not on your lists

16457..16723
DNA (267bp) protein (89aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_97_16
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

16801..19389
DNA (2589bp) protein (863aa)
WD40 domain protein beta Propeller n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UPA0_ROSS1
WD40 domain-containing protein
WD40 domain protein beta Propeller {ECO:0000313|EMBL:ABQ88453.1}; Flags: Precursor;; TaxID=357808 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;"
SCNpilot_expt_500_bf_scaffold_97_17
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19436..21883)
DNA (2448bp) protein (816aa)
Phosphomannomutase n=1 Tax=Rhodanobacter denitrificans RepID=I4WGW4_9GAMM
Phosphoglucomutase {ECO:0000313|EMBL:GAN45186.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
phosphomannomutase
SCNpilot_expt_500_bf_scaffold_97_18
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21906..22361)
DNA (456bp) protein (152aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071036};; dUTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00116}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
deoxyuridine 5'-triphosphate nucleotidohydrolase Dut (EC:3.6.1.23)
deoxyuridine 5''''-triphosphate nucleotidohydrolase n=1 Tax=Rudaea cellulosilytica RepID=UPI000360D4EF
SCNpilot_expt_500_bf_scaffold_97_19
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22358..23590)
DNA (1233bp) protein (411aa)
phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase (EC:4.1.1.36 6.3.2.5)
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase {ECO:0000313|EMBL:AGG90905.1}; EC=4.1.1.36 {ECO:0000313|EMBL:AGG90905.1};; EC=6.3.2.5 {ECO:0000313|EMBL:AGG90905.1};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase n=1 Tax=Rhodanobacter denitrificans RepID=I4WGW6_9GAMM
SCNpilot_expt_500_bf_scaffold_97_20
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23710..24381
DNA (672bp) protein (224aa)
DNA repair protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WGW7_9GAMM
DNA repair protein
DNA repair protein {ECO:0000313|EMBL:AGG90906.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_97_21
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24508..25581
DNA (1074bp) protein (358aa)
hypothetical protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B44DA4
Uncharacterized protein {ECO:0000313|EMBL:KFN43978.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
SCNpilot_expt_500_bf_scaffold_97_22
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25637..26230
DNA (594bp) protein (198aa)
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021192}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021179};; GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
folE; GTP cyclohydrolase I; K01495 GTP cyclohydrolase I [EC:3.5.4.16]
GTP cyclohydrolase I n=1 Tax=Xanthomonas arboricola RepID=UPI0002EAC937
SCNpilot_expt_500_bf_scaffold_97_23
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26659..27126)
DNA (468bp) protein (156aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000307EAEB
N-acetyltransferase GCN5 {ECO:0000313|EMBL:GAN45148.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
acetyltransferase
SCNpilot_expt_500_bf_scaffold_97_24
unknown

Not on your lists

comp(27246..28013)
DNA (768bp) protein (256aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_97_25
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28615..30018)
DNA (1404bp) protein (468aa)
nitrogen regulation protein NR(I) n=1 Tax=Dyella japonica RepID=UPI0002FA5B28
Chemotaxis protein CheY {ECO:0000313|EMBL:KGI79142.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
nitrogen regulation protein NR(I)
SCNpilot_expt_500_bf_scaffold_97_26
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30011..31051)
DNA (1041bp) protein (347aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
signal transduction histidine kinase, nitrogen specific; K07708 two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
Signal transduction histidine kinase, nitrogen specific n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQI6_9GAMM
SCNpilot_expt_500_bf_scaffold_97_27
unknown

Not on your lists

comp(31212..31391)
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_97_28
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31753..34719)
DNA (2967bp) protein (989aa)
hypothetical protein n=1 Tax=Cryocola sp. 340MFSha3.1 RepID=UPI00036F03B1
Uncharacterized protein {ECO:0000313|EMBL:KDP73309.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_97_29
unknown

Not on your lists

35236..35400
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_97_30
unknown

Not on your lists

comp(35455..35814)
DNA (360bp) protein (120aa)

This feature has no annotations

Displaying items 1-30 of 86 in total

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