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SCNpilot_expt_500_bf_scaffold_235

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_235_1
Shewanella sp. MR-7, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..7135)
DNA (7134bp) protein (2378aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003737B44
YD repeat-containing protein
YD repeat protein {ECO:0000313|EMBL:ABI42179.1}; Flags: Precursor;; TaxID=60481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella sp. (strain MR-7).;"
SCNpilot_expt_500_bf_scaffold_235_2
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7736..8071)
DNA (336bp) protein (112aa)
high potential iron-sulfur protein n=1 Tax=Burkholderia sp. JPY347 RepID=UPI0003799FD9
High potential iron-sulfur protein {ECO:0000313|EMBL:AHX13716.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
high potential iron-sulfur protein
SCNpilot_expt_500_bf_scaffold_235_3
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8068..8751)
DNA (684bp) protein (228aa)
Cytochrome c4 n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UWJ6_PSEUP
cytochrome c4
Cytochrome c4 {ECO:0000313|EMBL:AER56503.1}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
SCNpilot_expt_500_bf_scaffold_235_4
unknown

Not on your lists

comp(8801..9202)
DNA (402bp) protein (134aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_235_5
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9280..11826)
DNA (2547bp) protein (849aa)
Putative uncharacterized protein n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UWJ5_PSEUP rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AER56502.1}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
SCNpilot_expt_500_bf_scaffold_235_6
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11842..12906)
DNA (1065bp) protein (355aa)
Cytochrome C family protein n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UWJ4_PSEUP rbh
cytochrome C family protein rbh
Cytochrome C family protein {ECO:0000313|EMBL:AER56501.1}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
SCNpilot_expt_500_bf_scaffold_235_7
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12909..14213)
DNA (1305bp) protein (435aa)
subtilase family serine protease (EC:3.4.21.-)
Subtilase family serine protease, probable n=1 Tax=Xanthomonas translucens pv. graminis ART-Xtg29 RepID=K8Z148_XANCT
Subtilase family serine protease, probable {ECO:0000313|EMBL:EKU24680.1}; TaxID=1195885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens pv. graminis ART-Xtg29.;"
SCNpilot_expt_500_bf_scaffold_235_8
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14221..14865)
DNA (645bp) protein (215aa)
hypothetical protein n=1 Tax=Acidovorax avenae RepID=UPI0002F52CBA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADX46531.1}; Flags: Precursor;; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCNpilot_expt_500_bf_scaffold_235_9
Xanthomonas hortorum, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14870..15490)
DNA (621bp) protein (207aa)
RNA polymerase ECF-type sigma factor n=2 Tax=Xanthomonas RepID=V7ZCY5_9XANT
RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:ETC88481.1}; TaxID=863365 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas hortorum pv. carotae str. M081.;"
RNA polymerase sigma-E factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_500_bf_scaffold_235_10
unknown

Not on your lists

15703..16431
DNA (729bp) protein (243aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_235_11

Not on your lists

16522..17292
DNA (771bp) protein (257aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035C6C5C
hypothetical protein
Marine sediment metagenome DNA, contig: S01H4_C01984 {ECO:0000313|EMBL:GAG74278.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCNpilot_expt_500_bf_scaffold_235_12
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17890..18699
DNA (810bp) protein (270aa)
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
SCNpilot_expt_500_bf_scaffold_235_13
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18836..19747)
DNA (912bp) protein (304aa)
malate permease n=1 Tax=Xanthomonas sp. SHU199 RepID=UPI0003764F33 rbh
Uncharacterized protein {ECO:0000313|EMBL:KFN50688.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
hypothetical protein; K07088 rbh
SCNpilot_expt_500_bf_scaffold_235_14
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20138..20989)
DNA (852bp) protein (284aa)
spermidine synthase (EC:2.5.1.16)
spermidine synthase n=1 Tax=Dyella japonica RepID=UPI0002E73228
Polyamine aminopropyltransferase {ECO:0000256|HAMAP-Rule:MF_00198}; Putrescine aminopropyltransferase {ECO:0000256|HAMAP-Rule:MF_00198}; Spermidine synthase {ECO:0000256|HAMAP-Rule:MF_00198}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
SCNpilot_expt_500_bf_scaffold_235_15
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21222..23111
DNA (1890bp) protein (630aa)
Biosynthetic arginine decarboxylase {ECO:0000256|HAMAP-Rule:MF_01417}; Short=ADC {ECO:0000256|HAMAP-Rule:MF_01417};; EC=4.1.1.19 {ECO:0000256|HAMAP-Rule:MF_01417, ECO:0000256|SAAS:SAAS00212226};; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
arginine decarboxylase (EC:4.1.1.19)
Biosynthetic arginine decarboxylase n=1 Tax=Rhodanobacter denitrificans RepID=I4WGX2_9GAMM
SCNpilot_expt_500_bf_scaffold_235_16
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23211..24221
DNA (1011bp) protein (337aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036F1D77 rbh
3-beta hydroxysteroid dehydrogenase/isomerase rbh
Tax=GWC2_Geobacteraceae_58_44_curated
SCNpilot_expt_500_bf_scaffold_235_17
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24256..24891)
DNA (636bp) protein (212aa)
Putative threonine efflux protein n=1 Tax=Polaromonas sp. CF318 RepID=J2TJY0_9BURK
Putative threonine efflux protein {ECO:0000313|EMBL:EJL78867.1}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
lysine exporter protein LysE/YggA
SCNpilot_expt_500_bf_scaffold_235_18
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25283..26236
DNA (954bp) protein (318aa)
Uncharacterized protein n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7U800_MYXSD rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AKF84950.1}; TaxID=1334629 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus 124B02.;"
SCNpilot_expt_500_bf_scaffold_235_19
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26276..26914
DNA (639bp) protein (213aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000380A40E
Sterol-binding protein {ECO:0000313|EMBL:GAN45081.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_235_20
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26911..28572
DNA (1662bp) protein (554aa)
Probable protein kinase UbiB {ECO:0000256|SAAS:SAAS00063507}; EC=2.7.-.- {ECO:0000256|SAAS:SAAS00063486};; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
2-octaprenylphenol hydroxylase (EC:1.14.13.-) rbh
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003633B32 rbh
SCNpilot_expt_500_bf_scaffold_235_21
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28709..29401
DNA (693bp) protein (231aa)
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase-like protein n=1 Tax=Pseudomonas mendocina (strain NK-01) RepID=F4DTH1_PSEMN
Nuclease {ECO:0000313|EMBL:KGM54077.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase-like protein
SCNpilot_expt_500_bf_scaffold_235_22
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

29485..30129
DNA (645bp) protein (215aa)
Uncharacterized protein {ECO:0000313|EMBL:GAO44200.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
Putative uncharacterized protein id=4326272 bin=GWF2_OP3_43_52 species=Elusimicrobium minutum genus=Elusimicrobium taxon_order=Elusimicrobiales taxon_class=Elusimicrobia phylum=Elusimicrobia tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
hypothetical protein
SCNpilot_expt_500_bf_scaffold_235_23
unknown

Not on your lists

comp(30206..30316)
DNA (111bp) protein (37aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_235_24
unknown

Not on your lists

comp(30316..30648)
DNA (333bp) protein (111aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_235_25
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30909..31709)
DNA (801bp) protein (267aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI00036EFB42
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_500_bf_scaffold_235_26
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31712..32137)
DNA (426bp) protein (142aa)
hypothetical protein TGME49_103250 n=1 Tax=Toxoplasma gondii ME49 RepID=UPI000185F6EA
Uncharacterized protein {ECO:0000313|EMBL:EYF03667.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_235_27
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

32326..32895
DNA (570bp) protein (190aa)
RNA polymerase sigma 70 n=1 Tax=Salisaeta longa RepID=UPI0003B6720F
RNA polymerase sigma factor {ECO:0000313|EMBL:AHG88571.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
RNA polymerase, sigma subunit, ECF family
SCNpilot_expt_500_bf_scaffold_235_28
Pseudomonas sp. 21, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32948..33373)
DNA (426bp) protein (142aa)
Osmotically inducible protein C n=8 Tax=Bordetella RepID=K0MHP5_BORPB
Peroxiredoxin OsmC {ECO:0000313|EMBL:KJJ98579.1}; TaxID=1619948 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 21.;"
osmC; osmotically inducible protein C
SCNpilot_expt_500_bf_scaffold_235_29
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33473..33925)
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LVK9_HALO1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACY17570.1}; TaxID=502025 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2).;"
SCNpilot_expt_500_bf_scaffold_235_30
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34048..35874)
DNA (1827bp) protein (609aa)
AAA ATPase central domain protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RSY2_ACCPU rbh
AAA ATPase central domain-containing protein rbh
AAA ATPase central domain protein {ECO:0000313|EMBL:ACV34725.1}; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
Displaying items 1-30 of 47 in total

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