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SCNpilot_expt_500_bf_scaffold_60

Search features with annotation key words

Displaying items 1-30 of 180 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_60_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

278..2182
DNA (1905bp) protein (635aa)
ABC transporter related protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V8F9_VARPE rbh
Variovorax paradoxus strain MEDvA23 contig_9, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35626.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
ABC transporter; K15738 ATP-binding cassette, subfamily F, uup rbh
SCNpilot_expt_500_bf_scaffold_60_2
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2297..4021
DNA (1725bp) protein (575aa)
phospholipase D n=1 Tax=Variovorax paradoxus RepID=UPI0003749B90 rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL71990.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
phospholipase d/transphosphatidylase rbh
SCNpilot_expt_500_bf_scaffold_60_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4029..4940)
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CIA9_9BURK rbh
Variovorax paradoxus strain MEDvA23 contig_9, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35624.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein; K09796 hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_60_4
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4973..7279)
DNA (2307bp) protein (769aa)
Outer membrane receptor protein n=1 Tax=Variovorax sp. CF313 RepID=J2T1X0_9BURK rbh
Outer membrane receptor protein {ECO:0000313|EMBL:EJL71992.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein rbh
SCNpilot_expt_500_bf_scaffold_60_5
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7397..7768)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2KFS5_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL71993.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_60_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7780..9069)
DNA (1290bp) protein (430aa)
gumn family protein n=1 Tax=Variovorax paradoxus RepID=UPI00037BF859 rbh
gumn family protein; K09973 hypothetical protein rbh
GumN family protein {ECO:0000313|EMBL:ADU39588.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_bf_scaffold_60_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9134..9547
DNA (414bp) protein (138aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V8G5_VARPE
glyoxalase/bleomycin resistance protein/dioxygenase; K06991
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ADU39589.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_bf_scaffold_60_8
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9544..10728
DNA (1185bp) protein (395aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CIB3_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL71996.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_60_9
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10760..11734)
DNA (975bp) protein (325aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2T1X7_9BURK rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL71997.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_expt_500_bf_scaffold_60_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11766..11978)
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V9A9_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU39593.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_bf_scaffold_60_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11975..13744)
DNA (1770bp) protein (590aa)
FAD-binding monooxygenase protein; K05712 3-(3-hydroxy-phenyl)propionate hydroxylase [EC:1.14.13.127] rbh
FAD-dependent oxidoreductase n=1 Tax=Variovorax paradoxus RepID=UPI0003721524 rbh
Monooxygenase FAD-binding protein {ECO:0000313|EMBL:ADU39594.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_bf_scaffold_60_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13834..14613
DNA (780bp) protein (260aa)
Response regulator n=1 Tax=Variovorax sp. CF313 RepID=J2JVW2_9BURK rbh
Variovorax paradoxus strain MEDvA23 contig_9, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35618.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
LuxR family transcriptional regulator rbh
SCNpilot_expt_500_bf_scaffold_60_13
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14632..15729)
DNA (1098bp) protein (366aa)
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase n=1 Tax=Variovorax sp. CF313 RepID=J3CIB6_9BURK rbh
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase {ECO:0000313|EMBL:EJL72001.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative fumarylacetoacetate (FAA) hydrolase rbh
SCNpilot_expt_500_bf_scaffold_60_14
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15731..17041
DNA (1311bp) protein (437aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2T1Y3_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL72002.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_60_15
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17124..17435
DNA (312bp) protein (104aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003752434
Uncharacterized protein {ECO:0000313|EMBL:EJL72003.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_60_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17505..18608)
DNA (1104bp) protein (368aa)
Membrane protein AbrB duplication n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V9B6_VARPE rbh
Variovorax paradoxus strain MEDvA23 contig_9, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35614.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein; K07120 rbh
SCNpilot_expt_500_bf_scaffold_60_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18633..19508
DNA (876bp) protein (292aa)
Putative iron-regulated protein n=1 Tax=Variovorax sp. CF313 RepID=J3CI10_9BURK rbh
Variovorax paradoxus strain MEDvA23 contig_9, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35613.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_60_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19580..24052)
DNA (4473bp) protein (1491aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037D3E10 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS22911.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_500_bf_scaffold_60_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24143..25531)
DNA (1389bp) protein (463aa)
Putative uncharacterized protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5D1Z0_VARPS
Putative protein involved in formation of curli polymers-like protein
Uncharacterized protein {ECO:0000313|EMBL:ACS22910.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_500_bf_scaffold_60_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25549..26130)
DNA (582bp) protein (194aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037C8ADE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS22909.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_500_bf_scaffold_60_21
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26269..26673
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI0003663706
Uncharacterized protein {ECO:0000313|EMBL:EHP40919.1}; TaxID=1127483 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis OR16.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_60_22
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26731..28065)
DNA (1335bp) protein (445aa)
omega amino acid--pyruvate aminotransferase n=1 Tax=Variovorax paradoxus RepID=UPI0003706A33 rbh
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase {ECO:0000313|EMBL:EJL72006.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative omega-amino acid--pyruvate aminotransferase rbh
SCNpilot_expt_500_bf_scaffold_60_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28135..29001
DNA (867bp) protein (289aa)
Formyltetrahydrofolate deformylase {ECO:0000256|HAMAP-Rule:MF_01927}; EC=3.5.1.10 {ECO:0000256|HAMAP-Rule:MF_01927};; Formyl-FH(4) hydrolase {ECO:0000256|HAMAP-Rule:MF_01927}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
formyltetrahydrofolate deformylase; K01433 formyltetrahydrofolate deformylase [EC:3.5.1.10] rbh
Formyltetrahydrofolate deformylase n=1 Tax=Variovorax sp. CF313 RepID=J2T1Y8_9BURK rbh
SCNpilot_expt_500_bf_scaffold_60_24
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29003..29377)
DNA (375bp) protein (125aa)
signal peptide protein n=1 Tax=Variovorax paradoxus RepID=UPI00035CED84
Uncharacterized protein {ECO:0000313|EMBL:EJL72008.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_60_25
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29499..30824)
DNA (1326bp) protein (442aa)
Lipolytic protein G-D-S-L family n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V9C5_VARPE rbh
Variovorax paradoxus strain MEDvA23 contig_9, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35635.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
G-D-S-L family lipolytic protein rbh
SCNpilot_expt_500_bf_scaffold_60_26
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30890..34183)
DNA (3294bp) protein (1098aa)
Pyruvate carboxylase n=1 Tax=Variovorax sp. CF313 RepID=J2JVX3_9BURK rbh
Pyruvate carboxylase {ECO:0000313|EMBL:EJL72010.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
carbamoyL-phosphate synthase l chain ATP-binding protein rbh
SCNpilot_expt_500_bf_scaffold_60_27
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34194..35807)
DNA (1614bp) protein (538aa)
AMP-dependent synthetase n=1 Tax=Variovorax paradoxus RepID=UPI00036930A6 rbh
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II {ECO:0000313|EMBL:EJL72011.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative ligase rbh
SCNpilot_expt_500_bf_scaffold_60_28
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35893..36588
DNA (696bp) protein (232aa)
Transcriptional regulator, TetR family n=1 Tax=Variovorax paradoxus B4 RepID=T1XIS2_VARPD rbh
transcriptional regulator, TetR family rbh
Transcriptional regulator, TetR family {ECO:0000313|EMBL:AGU52015.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_bf_scaffold_60_29
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36614..37870
DNA (1257bp) protein (419aa)
amino acid ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI000382D878 rbh
ABC-type branched-chain amino acid transport system, periplasmic component {ECO:0000313|EMBL:EJL72013.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
extracellular ligand-binding receptor rbh
SCNpilot_expt_500_bf_scaffold_60_30
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38013..41237
DNA (3225bp) protein (1075aa)
cytochrome p450; K14338 cytochrome P450 / NADPH-cytochrome P450 reductase [EC:1.14.14.1 1.6.2.4] rbh
Sulfite reductase, alpha subunit (Flavoprotein) n=1 Tax=Variovorax sp. CF313 RepID=J3CI18_9BURK rbh
Sulfite reductase, alpha subunit (Flavoprotein) {ECO:0000313|EMBL:EJL72014.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
Displaying items 1-30 of 180 in total

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