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SCNpilot_expt_500_bf_scaffold_82

Search features with annotation key words

Displaying items 1-30 of 241 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_82_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3..248
DNA (246bp) protein (82aa)
FAD linked oxidase domain protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6S2_VARPE
fad linked oxidase domain-containing protein
Variovorax paradoxus strain MEDvA23 contig_20, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33716.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_expt_500_bf_scaffold_82_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(543..1238)
DNA (696bp) protein (232aa)
Putative ABC transporter, periplasmic molybdate binding protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V1M0_VARPE
ABC transporter periplasmic molybdate binding protein; K02020 molybdate transport system substrate-binding protein
Putative ABC transporter, periplasmic molybdate binding protein {ECO:0000313|EMBL:ADU36776.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_bf_scaffold_82_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1258..2151)
DNA (894bp) protein (298aa)
6-phosphogluconate dehydrogenase n=1 Tax=Variovorax paradoxus RepID=UPI00037CCB3C rbh
putative NAD binding domain-containing phosphogluconate dehydrogenase rbh
Putative NAD binding domain-containing phosphogluconate dehydrogenase {ECO:0000313|EMBL:AGU52714.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_bf_scaffold_82_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2177..3178)
DNA (1002bp) protein (334aa)
Putative uncharacterized protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CZT0_VARPS rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACS22330.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_500_bf_scaffold_82_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3190..4170)
DNA (981bp) protein (327aa)
Putative Bug-like extra-cytoplasmic solute receptor, TTT-family n=1 Tax=Variovorax paradoxus B4 RepID=T1XIJ9_VARPD rbh
putative Bug-like extra-cytoplasmic solute receptor, TTT-family rbh
Putative Bug-like extra-cytoplasmic solute receptor, TTT-family {ECO:0000313|EMBL:AGU52712.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_bf_scaffold_82_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4206..5510)
DNA (1305bp) protein (435aa)
extradiol ring-cleavage dioxygenase class iii protein subunit b; K04099 protocatechuate 4,5-dioxygenase [EC:1.13.11.8] rbh
Extradiol ring-cleavage dioxygenase class III protein subunit B n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V1M2_VARPE rbh
Extradiol ring-cleavage dioxygenase class III protein subunit B {ECO:0000313|EMBL:ADU36778.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_bf_scaffold_82_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5526..6224)
DNA (699bp) protein (233aa)
4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; K10218 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17] rbh
4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V1M3_VARPE rbh
4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase {ECO:0000313|EMBL:ADU36779.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_bf_scaffold_82_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6227..7255)
DNA (1029bp) protein (343aa)
Putative 4-oxalomesaconate hydratase n=1 Tax=Variovorax paradoxus B4 RepID=T1XJG0_VARPD rbh
Variovorax paradoxus strain MEDvA23 contig_38, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ30894.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
putative 4-oxalomesaconate hydratase rbh
SCNpilot_expt_500_bf_scaffold_82_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7424..8701
DNA (1278bp) protein (426aa)
Transcriptional regulator, LysR family n=1 Tax=Variovorax paradoxus B4 RepID=T1XIJ5_VARPD rbh
transcriptional regulator, LysR family rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AGU52707.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_bf_scaffold_82_10
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8708..9157)
DNA (450bp) protein (150aa)
Acetyltransferase n=1 Tax=Acidovorax sp. CF316 RepID=J1ENJ1_9BURK
Acetyltransferase {ECO:0000313|EMBL:EJE53821.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
N-acetyltransferase GCN5
SCNpilot_expt_500_bf_scaffold_82_11
Aneurinibacillus migulanus, Aneurinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9194..9535)
DNA (342bp) protein (114aa)
Tetratricopeptide repeat protein n=1 Tax=Aneurinibacillus aneurinilyticus ATCC 12856 RepID=U1YEW8_ANEAE
Strain NCTC 7096 contig_54, whole genome shotgun sequence {ECO:0000313|EMBL:KIV56723.1}; TaxID=47500 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Aneurinibacillus group; Aneurinibacillus.;" source="Aneurinibacillus migulanus (Bacillus migulanus).;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_82_12
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9666..11309)
DNA (1644bp) protein (548aa)
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI00036285D7 rbh
Membrane protein {ECO:0000313|EMBL:KJA11253.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
putative methyl-accepting chemotaxis protein rbh
SCNpilot_expt_500_bf_scaffold_82_13
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11466..12299)
DNA (834bp) protein (278aa)
Putative hydrolase of the alpha/beta superfamily n=1 Tax=Variovorax sp. CF313 RepID=J3CPG8_9BURK rbh
Putative hydrolase of the alpha/beta superfamily {ECO:0000313|EMBL:EJL75601.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative alpha/beta hydrolase family protein rbh
SCNpilot_expt_500_bf_scaffold_82_14
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12447..14345
DNA (1899bp) protein (633aa)
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB n=1 Tax=Variovorax sp. CF313 RepID=J3CJ90_9BURK rbh
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB {ECO:0000313|EMBL:EJL72566.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
type II secretion system protein e rbh
SCNpilot_expt_500_bf_scaffold_82_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14485..15312
DNA (828bp) protein (276aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003756AF3 rbh
signal transduction protein rbh
Putative signal transduction protein {ECO:0000313|EMBL:ACS20197.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_500_bf_scaffold_82_16
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15322..16167)
DNA (846bp) protein (282aa)
2-dehydro-3-deoxyphosphooctonate aldolase {ECO:0000256|HAMAP-Rule:MF_00056, ECO:0000256|SAAS:SAAS00078566}; EC=2.5.1.55 {ECO:0000256|HAMAP-Rule:MF_00056, ECO:0000256|SAAS:SAAS00078538};; 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00056}; KDO-8-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00056}; Phospho-2-dehydro-3-deoxyoctonate aldolase {ECO:0000256|HAMAP-Rule:MF_00056}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadace
2-dehydro-3-deoxyphosphooctonate aldolase; K01627 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] rbh
2-dehydro-3-deoxyphosphooctonate aldolase n=1 Tax=Variovorax sp. CF313 RepID=J2TBU0_9BURK rbh
SCNpilot_expt_500_bf_scaffold_82_17
Achromobacter insuavis, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16181..17374)
DNA (1194bp) protein (398aa)
hypothetical protein n=1 Tax=Burkholderia sp. JPY347 RepID=UPI00036CA4F3 rbh
Uncharacterized protein {ECO:0000313|EMBL:EGP42955.1}; TaxID=1003200 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter insuavis AXX-A.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_82_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17397..18356)
DNA (960bp) protein (320aa)
Trypsin-like serine protease with C-terminal PDZ domain containing protein n=1 Tax=Variovorax sp. CF313 RepID=J2KRD5_9BURK rbh
Variovorax paradoxus strain MEDvA23 contig_70, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ25212.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
SCNpilot_expt_500_bf_scaffold_82_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18456..20771)
DNA (2316bp) protein (772aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V307_VARPE rbh
Uncharacterized protein {ECO:0000313|EMBL:ADU38073.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_82_20
unknown

Not on your lists

21013..21264
DNA (252bp) protein (84aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036AB966
SCNpilot_expt_500_bf_scaffold_82_21
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21270..21899)
DNA (630bp) protein (210aa)
Putative threonine efflux protein n=1 Tax=Acidovorax sp. CF316 RepID=J0UA16_9BURK
Putative threonine efflux protein {ECO:0000313|EMBL:EJE53002.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
amino acid transporter LysE
SCNpilot_expt_500_bf_scaffold_82_22
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21929..23608)
DNA (1680bp) protein (560aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CP15_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL75604.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_82_23
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23820..24086
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2K5Y6_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL75605.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_82_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24271..26181
DNA (1911bp) protein (637aa)
1,4-alpha-glucan branching enzyme GlgB {ECO:0000256|HAMAP-Rule:MF_00685}; EC=2.4.1.18 {ECO:0000256|HAMAP-Rule:MF_00685};; 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase {ECO:0000256|HAMAP-Rule:MF_00685}; Alpha-(1->4)-glucan branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; Glycogen branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
1,4-alpha-glucan branching protein; K00700 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] rbh
1,4-alpha-glucan branching enzyme GlgB n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6Y6_VARPE rbh
SCNpilot_expt_500_bf_scaffold_82_25
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26178..28247
DNA (2070bp) protein (690aa)
Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase {ECO:0000256|HAMAP-Rule:MF_02124}; Short=GMPMT {ECO:0000256|HAMAP-Rule:MF_02124};; EC=2.4.99.16 {ECO:0000256|HAMAP-Rule:MF_02124};; (1->4)-alpha-D-glucan:maltose-1-phosphate alpha-D-maltosyltransferase {ECO:0000256|HAMAP-Rule:MF_02124}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase n=1 Tax=Variovorax paradoxus RepID=UPI0003649644 rbh
alpha amylase catalytic subunit rbh
SCNpilot_expt_500_bf_scaffold_82_26
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28262..31606
DNA (3345bp) protein (1115aa)
trehalose synthase; K05343 maltose alpha-D-glucosyltransferase [EC:5.4.99.16] rbh
Trehalose synthase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6Y8_VARPE rbh
Trehalose synthase {ECO:0000313|EMBL:ADU37192.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_bf_scaffold_82_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31640..32422
DNA (783bp) protein (261aa)
Conserved TM helix repeat-containing protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6Y9_VARPE rbh
hypothetical protein rbh
Conserved TM helix repeat-containing protein {ECO:0000313|EMBL:ADU37193.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_bf_scaffold_82_28
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32464..34626
DNA (2163bp) protein (721aa)
Glycogen operon protein GlgX homolog {ECO:0000256|SAAS:SAAS00046872}; EC=3.2.1.- {ECO:0000256|SAAS:SAAS00055489};; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
glycogen debranching protein glgx; K02438 glycogen operon protein GlgX [EC:3.2.1.-] rbh
Glycogen debranching enzyme GlgX n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6Z0_VARPE rbh
SCNpilot_expt_500_bf_scaffold_82_29
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34623..36491
DNA (1869bp) protein (623aa)
Malto-oligosyltrehalose trehalohydrolase {ECO:0000256|PIRNR:PIRNR006337}; Short=MTHase {ECO:0000256|PIRNR:PIRNR006337};; EC=3.2.1.141 {ECO:0000256|PIRNR:PIRNR006337};; 4-alpha-D-((1->4)-alpha-D-glucano)trehalose trehalohydrolase {ECO:0000256|PIRNR:PIRNR006337}; Maltooligosyl trehalose trehalohydrolase {ECO:0000256|PIRNR:PIRNR006337}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
malto-oligosyltrehalose trehalohydrolase; K01236 maltooligosyltrehalose trehalohydrolase [EC:3.2.1.141] rbh
Malto-oligosyltrehalose trehalohydrolase n=1 Tax=Variovorax sp. CF313 RepID=J3CNY1_9BURK rbh
SCNpilot_expt_500_bf_scaffold_82_30
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36481..41658
DNA (5178bp) protein (1726aa)
4-alpha-glucanotransferase {ECO:0000256|RuleBase:RU361207}; EC=2.4.1.25 {ECO:0000256|RuleBase:RU361207};; Amylomaltase {ECO:0000256|RuleBase:RU361207}; Disproportionating enzyme {ECO:0000256|RuleBase:RU361207}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
Malto-oligosyltrehalose synthase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6Z2_VARPE rbh
malto-oligosyltrehalose synthase rbh
Displaying items 1-30 of 241 in total

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