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SCNpilot_expt_500_bf_scaffold_154

Search features with annotation key words

Displaying items 1-30 of 107 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_154_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1204)
DNA (1203bp) protein (401aa)
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI00035C6749 rbh
putative methyl-accepting chemotaxis protein rbh
Putative methyl-accepting chemotaxis protein {ECO:0000313|EMBL:AGU51416.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_bf_scaffold_154_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1272..1472)
DNA (201bp) protein (67aa)
purine-binding chemotaxis protein n=1 Tax=Variovorax paradoxus RepID=UPI000366753D
CheW protein; K03408 purine-binding chemotaxis protein CheW
CheW protein {ECO:0000313|EMBL:ACS20803.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_500_bf_scaffold_154_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1764..3368)
DNA (1605bp) protein (535aa)
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI0003754FB5 rbh
putative aerotaxis receptor rbh
Putative aerotaxis receptor {ECO:0000313|EMBL:AGU51421.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_bf_scaffold_154_4
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3385..3639)
DNA (255bp) protein (85aa)
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI00035C6749
Methyl-accepting chemotaxis protein I (Serine chemoreceptor protein) {ECO:0000313|EMBL:CDS50369.1}; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
tar3; methyl-accepting chemotaxis protein; K05874 methyl-accepting chemotaxis protein I, serine sensor receptor
SCNpilot_expt_500_bf_scaffold_154_5
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5006..6742)
DNA (1737bp) protein (579aa)
membrane protein n=2 Tax=Variovorax paradoxus RepID=UPI00036A15E8 rbh
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:EER58821.1}; Flags: Precursor; Fragment;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
methyl-accepting chemotaxis sensory transducer; K03406 methyl-accepting chemotaxis protein
SCNpilot_expt_500_bf_scaffold_154_6
unknown

Not on your lists

comp(6750..7037)
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036E2B3C
SCNpilot_expt_500_bf_scaffold_154_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7042..8601)
DNA (1560bp) protein (520aa)
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI0003612853 rbh
methyl-accepting chemotaxis sensory transducer; K03406 methyl-accepting chemotaxis protein rbh
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:ACS20802.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_500_bf_scaffold_154_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8659..8856)
DNA (198bp) protein (66aa)
CheW protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CXU4_VARPS
CheW protein; K03408 purine-binding chemotaxis protein CheW
CheW protein {ECO:0000313|EMBL:ACS20803.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_500_bf_scaffold_154_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9216..10232)
DNA (1017bp) protein (339aa)
flagellar rod assembly protein FlgJ n=1 Tax=Variovorax paradoxus RepID=UPI00037B6390 rbh
flagellar rod assembly protein/muramidase FlgJ; K02395 flagellar protein FlgJ rbh
Flagellar rod assembly protein/muramidase FlgJ {ECO:0000313|EMBL:ACS20804.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_500_bf_scaffold_154_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10243..11451)
DNA (1209bp) protein (403aa)
flagellar P-ring protein FlgI n=1 Tax=Variovorax paradoxus RepID=UPI0003667D32 rbh
flgI; flagellar P-ring protein FlgL rbh
Flagellar P-ring protein {ECO:0000256|HAMAP-Rule:MF_00416}; Basal body P-ring protein {ECO:0000256|HAMAP-Rule:MF_00416}; Flags: Precursor;; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_bf_scaffold_154_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11454..12161)
DNA (708bp) protein (236aa)
flagellar basal body L-ring protein n=1 Tax=Variovorax paradoxus RepID=UPI00036026AD rbh
flgH; flagellar L-ring protein FlgH rbh
Flagellar L-ring protein {ECO:0000256|HAMAP-Rule:MF_00415}; Basal body L-ring protein {ECO:0000256|HAMAP-Rule:MF_00415}; Flags: Precursor;; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_bf_scaffold_154_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12161..12943)
DNA (783bp) protein (261aa)
flagellar basal body rod protein FlgG n=1 Tax=Variovorax paradoxus RepID=UPI00036657E3 rbh
flgG; flagellar basal-body rod protein FlgG rbh
Flagellar basal-body rod protein FlgG {ECO:0000313|EMBL:AGU51427.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_bf_scaffold_154_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13020..13766)
DNA (747bp) protein (249aa)
flagellar basal body rod protein FlgF n=1 Tax=Variovorax paradoxus RepID=UPI00035D6891 rbh
flgF; flagellar basal-body rod protein FlgF rbh
Flagellar basal-body rod protein FlgF {ECO:0000313|EMBL:AGU51428.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_bf_scaffold_154_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13810..15030)
DNA (1221bp) protein (407aa)
flagellar hook protein FlgE n=1 Tax=Variovorax paradoxus RepID=UPI00036CFD20 rbh
flgE; flagellar hook protein FlgE rbh
Flagellar hook protein FlgE {ECO:0000313|EMBL:AGU51429.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_bf_scaffold_154_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15099..15779)
DNA (681bp) protein (227aa)
flagellar basal body rod modification protein FlgD n=1 Tax=Variovorax paradoxus RepID=UPI000369658F rbh
flgD; putative basal-body rod modification protein FlgD rbh
Putative basal-body rod modification protein FlgD {ECO:0000313|EMBL:AGU51430.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_bf_scaffold_154_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15802..16218)
DNA (417bp) protein (139aa)
flagellar basal body rod protein FlgC n=1 Tax=Variovorax paradoxus RepID=UPI00037B1657
flgC; flagellar basal-body rod protein FlgC
Flagellar basal-body rod protein FlgC {ECO:0000256|RuleBase:RU362062}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_bf_scaffold_154_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16222..16629)
DNA (408bp) protein (136aa)
flagellar biosynthesis protein FlgB n=1 Tax=Variovorax paradoxus RepID=UPI000368CB56
flgB; flagellar basal-body rod protein FlgB
Flagellar basal body rod protein FlgB {ECO:0000256|PIRNR:PIRNR002889}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_bf_scaffold_154_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16850..17566
DNA (717bp) protein (239aa)
flagella basal body P-ring formation protein FlgA n=1 Tax=Variovorax paradoxus RepID=UPI000381F204 rbh
flgA; putative flagella basal body P-ring formation protein FlgA
Flagella basal body P-ring formation protein FlgA {ECO:0000256|RuleBase:RU362063}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_bf_scaffold_154_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17727..17966
DNA (240bp) protein (80aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000382A263
flgM; putative flagellar biosynthesis anti-sigma factor FlgM
Putative flagellar biosynthesis anti-sigma factor FlgM {ECO:0000313|EMBL:AGU51434.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_bf_scaffold_154_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17963..18427
DNA (465bp) protein (155aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00035D1F7F
FlgN family protein
FlgN family protein {ECO:0000313|EMBL:AGU51435.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_bf_scaffold_154_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18478..19302
DNA (825bp) protein (275aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037E3A16 rbh
winged helix family two component transcriptional regulator
Putative two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ADU39107.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_bf_scaffold_154_22
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19475..19720)
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2JVM5_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL71925.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_154_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19968..21302)
DNA (1335bp) protein (445aa)
class III aminotransferase; K00596 2,2-dialkylglycine decarboxylase (pyruvate) [EC:4.1.1.64] rbh
Aminotransferase class-III n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UX99_VARPE rbh
Aminotransferase class-III {ECO:0000313|EMBL:ADU38816.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_bf_scaffold_154_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21383..22240
DNA (858bp) protein (286aa)
Transcriptional regulator, LysR family n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UXA0_VARPE rbh
LysR family transcriptional regulator rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ADU38817.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_bf_scaffold_154_25
unknown

Not on your lists

22387..22539
DNA (153bp) protein (51aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_154_26
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22543..23118)
DNA (576bp) protein (192aa)
Transcriptional regulator n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HQ46_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:EJN02113.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
transcriptional regulator, TetR family
SCNpilot_expt_500_bf_scaffold_154_27
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23350..23802)
DNA (453bp) protein (151aa)
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
seryl-tRNA synthetase (EC:6.1.1.11); K01875 seryl-tRNA synthetase [EC:6.1.1.11]
Serine--tRNA ligase n=1 Tax=Variovorax sp. CF313 RepID=J3CHW9_9BURK
SCNpilot_expt_500_bf_scaffold_154_28
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23799..24638)
DNA (840bp) protein (280aa)
serS; serine--tRNA ligase SerS (EC:6.1.1.11)
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
Serine--tRNA ligase n=1 Tax=Variovorax paradoxus B4 RepID=T1XEA0_VARPD
SCNpilot_expt_500_bf_scaffold_154_29
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24662..25627)
DNA (966bp) protein (322aa)
pyridoxaL-5'-phosphate-dependent protein beta subunit; K01754 threonine dehydratase [EC:4.3.1.19] rbh
Threonine dehydratase n=1 Tax=Variovorax sp. CF313 RepID=J3CA72_9BURK rbh
Threonine dehydratase {ECO:0000313|EMBL:EJL67449.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_expt_500_bf_scaffold_154_30
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25624..26592)
DNA (969bp) protein (323aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hydroxymethylbutenyl pyrophosphate reductase (EC:1.17.1.2); K03527 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [EC:1.17.1.2] rbh
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Variovorax sp. CF313 RepID=J2K2D9_9BURK rbh
Displaying items 1-30 of 107 in total

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