name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_500_bf_scaffold_154_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2..1204)
|
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI00035C6749
rbh
putative methyl-accepting chemotaxis protein
rbh
Putative methyl-accepting chemotaxis protein {ECO:0000313|EMBL:AGU51416.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_expt_500_bf_scaffold_154_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1272..1472)
|
purine-binding chemotaxis protein n=1 Tax=Variovorax paradoxus RepID=UPI000366753D
CheW protein; K03408 purine-binding chemotaxis protein CheW
CheW protein {ECO:0000313|EMBL:ACS20803.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
|
|
SCNpilot_expt_500_bf_scaffold_154_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1764..3368)
|
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI0003754FB5
rbh
putative aerotaxis receptor
rbh
Putative aerotaxis receptor {ECO:0000313|EMBL:AGU51421.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_expt_500_bf_scaffold_154_4
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3385..3639)
|
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI00035C6749
Methyl-accepting chemotaxis protein I (Serine chemoreceptor protein) {ECO:0000313|EMBL:CDS50369.1}; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
tar3; methyl-accepting chemotaxis protein; K05874 methyl-accepting chemotaxis protein I, serine sensor receptor
|
|
SCNpilot_expt_500_bf_scaffold_154_5
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5006..6742)
|
membrane protein n=2 Tax=Variovorax paradoxus RepID=UPI00036A15E8
rbh
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:EER58821.1}; Flags: Precursor; Fragment;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
methyl-accepting chemotaxis sensory transducer; K03406 methyl-accepting chemotaxis protein
|
|
SCNpilot_expt_500_bf_scaffold_154_6
unknown
|
Not on your lists |
comp(6750..7037)
|
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036E2B3C
|
|
SCNpilot_expt_500_bf_scaffold_154_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(7042..8601)
|
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI0003612853
rbh
methyl-accepting chemotaxis sensory transducer; K03406 methyl-accepting chemotaxis protein
rbh
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:ACS20802.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
|
|
SCNpilot_expt_500_bf_scaffold_154_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(8659..8856)
|
CheW protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CXU4_VARPS
CheW protein; K03408 purine-binding chemotaxis protein CheW
CheW protein {ECO:0000313|EMBL:ACS20803.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
|
|
SCNpilot_expt_500_bf_scaffold_154_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(9216..10232)
|
flagellar rod assembly protein FlgJ n=1 Tax=Variovorax paradoxus RepID=UPI00037B6390
rbh
flagellar rod assembly protein/muramidase FlgJ; K02395 flagellar protein FlgJ
rbh
Flagellar rod assembly protein/muramidase FlgJ {ECO:0000313|EMBL:ACS20804.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
|
|
SCNpilot_expt_500_bf_scaffold_154_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10243..11451)
|
flagellar P-ring protein FlgI n=1 Tax=Variovorax paradoxus RepID=UPI0003667D32
rbh
flgI; flagellar P-ring protein FlgL
rbh
Flagellar P-ring protein {ECO:0000256|HAMAP-Rule:MF_00416}; Basal body P-ring protein {ECO:0000256|HAMAP-Rule:MF_00416}; Flags: Precursor;; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_expt_500_bf_scaffold_154_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(11454..12161)
|
flagellar basal body L-ring protein n=1 Tax=Variovorax paradoxus RepID=UPI00036026AD
rbh
flgH; flagellar L-ring protein FlgH
rbh
Flagellar L-ring protein {ECO:0000256|HAMAP-Rule:MF_00415}; Basal body L-ring protein {ECO:0000256|HAMAP-Rule:MF_00415}; Flags: Precursor;; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_expt_500_bf_scaffold_154_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12161..12943)
|
flagellar basal body rod protein FlgG n=1 Tax=Variovorax paradoxus RepID=UPI00036657E3
rbh
flgG; flagellar basal-body rod protein FlgG
rbh
Flagellar basal-body rod protein FlgG {ECO:0000313|EMBL:AGU51427.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_expt_500_bf_scaffold_154_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(13020..13766)
|
flagellar basal body rod protein FlgF n=1 Tax=Variovorax paradoxus RepID=UPI00035D6891
rbh
flgF; flagellar basal-body rod protein FlgF
rbh
Flagellar basal-body rod protein FlgF {ECO:0000313|EMBL:AGU51428.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_expt_500_bf_scaffold_154_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(13810..15030)
|
flagellar hook protein FlgE n=1 Tax=Variovorax paradoxus RepID=UPI00036CFD20
rbh
flgE; flagellar hook protein FlgE
rbh
Flagellar hook protein FlgE {ECO:0000313|EMBL:AGU51429.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_expt_500_bf_scaffold_154_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(15099..15779)
|
flagellar basal body rod modification protein FlgD n=1 Tax=Variovorax paradoxus RepID=UPI000369658F
rbh
flgD; putative basal-body rod modification protein FlgD
rbh
Putative basal-body rod modification protein FlgD {ECO:0000313|EMBL:AGU51430.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_expt_500_bf_scaffold_154_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(15802..16218)
|
flagellar basal body rod protein FlgC n=1 Tax=Variovorax paradoxus RepID=UPI00037B1657
flgC; flagellar basal-body rod protein FlgC
Flagellar basal-body rod protein FlgC {ECO:0000256|RuleBase:RU362062}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_expt_500_bf_scaffold_154_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(16222..16629)
|
flagellar biosynthesis protein FlgB n=1 Tax=Variovorax paradoxus RepID=UPI000368CB56
flgB; flagellar basal-body rod protein FlgB
Flagellar basal body rod protein FlgB {ECO:0000256|PIRNR:PIRNR002889}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_expt_500_bf_scaffold_154_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
16850..17566
|
flagella basal body P-ring formation protein FlgA n=1 Tax=Variovorax paradoxus RepID=UPI000381F204
rbh
flgA; putative flagella basal body P-ring formation protein FlgA
Flagella basal body P-ring formation protein FlgA {ECO:0000256|RuleBase:RU362063}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_expt_500_bf_scaffold_154_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
17727..17966
|
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000382A263
flgM; putative flagellar biosynthesis anti-sigma factor FlgM
Putative flagellar biosynthesis anti-sigma factor FlgM {ECO:0000313|EMBL:AGU51434.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_expt_500_bf_scaffold_154_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
17963..18427
|
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00035D1F7F
FlgN family protein
FlgN family protein {ECO:0000313|EMBL:AGU51435.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_expt_500_bf_scaffold_154_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
18478..19302
|
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037E3A16
rbh
winged helix family two component transcriptional regulator
Putative two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ADU39107.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_expt_500_bf_scaffold_154_22
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(19475..19720)
|
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2JVM5_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL71925.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
|
|
SCNpilot_expt_500_bf_scaffold_154_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(19968..21302)
|
Aminotransferase class-III n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UX99_VARPE
rbh
Aminotransferase class-III {ECO:0000313|EMBL:ADU38816.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_expt_500_bf_scaffold_154_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21383..22240
|
Transcriptional regulator, LysR family n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UXA0_VARPE
rbh
LysR family transcriptional regulator
rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ADU38817.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_expt_500_bf_scaffold_154_25
unknown
|
Not on your lists |
22387..22539
|
This feature has no annotations |
|
SCNpilot_expt_500_bf_scaffold_154_26
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(22543..23118)
|
Transcriptional regulator n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HQ46_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:EJN02113.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
transcriptional regulator, TetR family
|
|
SCNpilot_expt_500_bf_scaffold_154_27
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(23350..23802)
|
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
Serine--tRNA ligase n=1 Tax=Variovorax sp. CF313 RepID=J3CHW9_9BURK
|
|
SCNpilot_expt_500_bf_scaffold_154_28
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(23799..24638)
|
serS; serine--tRNA ligase SerS (EC:6.1.1.11)
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
Serine--tRNA ligase n=1 Tax=Variovorax paradoxus B4 RepID=T1XEA0_VARPD
|
|
SCNpilot_expt_500_bf_scaffold_154_29
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(24662..25627)
|
pyridoxaL-5'-phosphate-dependent protein beta subunit; K01754 threonine dehydratase [EC:4.3.1.19]
rbh
Threonine dehydratase n=1 Tax=Variovorax sp. CF313 RepID=J3CA72_9BURK
rbh
Threonine dehydratase {ECO:0000313|EMBL:EJL67449.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
|
|
SCNpilot_expt_500_bf_scaffold_154_30
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(25624..26592)
|
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hydroxymethylbutenyl pyrophosphate reductase (EC:1.17.1.2); K03527 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [EC:1.17.1.2]
rbh
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Variovorax sp. CF313 RepID=J2K2D9_9BURK
rbh
|