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SCNpilot_expt_500_bf_scaffold_192

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Displaying items 1-30 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_192_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..128
DNA (126bp) protein (42aa)
electron transfer flavoprotein subunit beta n=1 Tax=Variovorax paradoxus RepID=UPI00037C56B0
etfA; electron transfer flavoprotein, subunit alpha
Electron transfer flavoprotein alpha subunit {ECO:0000313|EMBL:ACS19990.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_500_bf_scaffold_192_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

143..1114
DNA (972bp) protein (324aa)
2-nitropropane dioxygenase npd; K00459 nitronate monooxygenase [EC:1.13.12.16] rbh
2-nitropropane dioxygenase NPD n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V9N9_VARPE rbh
Variovorax paradoxus strain MEDvA23 contig_26, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ32754.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_expt_500_bf_scaffold_192_3
Pseudomonas sp. MT-1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2643..4670
DNA (2028bp) protein (676aa)
Phosphotransferase domain-containing protein n=1 Tax=Vibrio cholerae HE48 RepID=F9AYS5_VIBCL
Phosphotransferase domain-containing protein {ECO:0000313|EMBL:BAP80667.1}; TaxID=150396 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. MT-1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_192_4
Pseudomonas sp. MT-1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4648..4941
DNA (294bp) protein (98aa)
hypothetical protein n=1 Tax=Gilvimarinus chinensis RepID=UPI000361E1B9
Uncharacterized protein {ECO:0000313|EMBL:BAP80666.1}; TaxID=150396 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. MT-1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_192_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5294..5893
DNA (600bp) protein (200aa)
C4-dicarboxylate ABC transporter n=1 Tax=Variovorax paradoxus RepID=UPI000374D608 rbh
tripartite ATP-independent periplasmic transporter dctq component rbh
Tripartite ATP-independent periplasmic transporter DctQ component {ECO:0000313|EMBL:ADU35077.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_bf_scaffold_192_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5890..7188
DNA (1299bp) protein (433aa)
C4-dicarboxylate ABC transporter n=1 Tax=Variovorax paradoxus RepID=UPI000361A6B6 rbh
TRAP dicarboxylate transporter subunit DctM rbh
TRAP dicarboxylate transporter, DctM subunit {ECO:0000313|EMBL:ACS17487.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_500_bf_scaffold_192_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7283..8320
DNA (1038bp) protein (346aa)
C4-dicarboxylate ABC transporter n=1 Tax=Variovorax paradoxus RepID=UPI0003817B60 rbh
TRAP dicarboxylate transporter, subunit DctP rbh
TRAP dicarboxylate transporter, subunit DctP {ECO:0000313|EMBL:AGU48013.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_bf_scaffold_192_8
Ralstonia sp. AU12-08, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8351..9316)
DNA (966bp) protein (322aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036C4998 rbh
AraC family transcriptional regulator {ECO:0000313|EMBL:EPX99564.1}; TaxID=1235457 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. AU12-08.;"
transcriptional regulator, AraC family rbh
SCNpilot_expt_500_bf_scaffold_192_9
Ralstonia sp. AU12-08, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9397..9858
DNA (462bp) protein (154aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036A7F26
Uncharacterized protein {ECO:0000313|EMBL:EPX99563.1}; TaxID=1235457 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. AU12-08.;"
putative tautomerase
SCNpilot_expt_500_bf_scaffold_192_10
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9878..10705
DNA (828bp) protein (276aa)
dienelactone hydrolase n=1 Tax=Variovorax paradoxus RepID=UPI000371447A rbh
Dienelactone hydrolase {ECO:0000313|EMBL:KIF81310.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_192_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10775..11752
DNA (978bp) protein (326aa)
inosine/uridine-preferring nucleoside hydrolase; K01239 purine nucleosidase [EC:3.2.2.1] rbh
Inosine-uridine nucleoside N-ribohydrolase n=1 Tax=Variovorax sp. CF313 RepID=J3CEP0_9BURK rbh
Inosine-uridine nucleoside N-ribohydrolase {ECO:0000313|EMBL:EJL70119.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_expt_500_bf_scaffold_192_12
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11858..12913
DNA (1056bp) protein (352aa)
Putative dienelactone hydrolase n=1 Tax=Variovorax sp. CF313 RepID=J2JQN9_9BURK rbh
Putative dienelactone hydrolase {ECO:0000313|EMBL:EJL70120.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative dienelactone hydrolase rbh
SCNpilot_expt_500_bf_scaffold_192_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12967..13716)
DNA (750bp) protein (250aa)
ABC transporter; K10004 glutamate/aspartate transport system ATP-binding protein [EC:3.6.3.-] rbh
ABC transporter related n=2 Tax=Variovorax paradoxus RepID=C5CMI3_VARPS rbh
ABC transporter related {ECO:0000313|EMBL:ACS17484.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_500_bf_scaffold_192_14
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13744..14412)
DNA (669bp) protein (223aa)
glutamate/aspartate transporter permease GltK n=1 Tax=Variovorax paradoxus RepID=UPI00035DD852 rbh
polar amino acid ABC transporter permease; K10002 glutamate/aspartate transport system permease protein rbh
Polar amino acid ABC transporter, inner membrane subunit {ECO:0000313|EMBL:ADX47876.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCNpilot_expt_500_bf_scaffold_192_15
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14414..15172)
DNA (759bp) protein (253aa)
glutamate ABC transporter permease n=1 Tax=Variovorax paradoxus RepID=UPI00036A542B rbh
polar amino acid abc transporter, inner membrane subunit; K10003 glutamate/aspartate transport system permease protein
Polar amino acid ABC transporter inner membrane subunit {ECO:0000313|EMBL:GAO20566.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_500_bf_scaffold_192_16
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15271..16167)
DNA (897bp) protein (299aa)
ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI00036AFAB2 rbh
amino-acid ABC transporter bindingprotein ybeJ; K10001 glutamate/aspartate transport system substrate-binding protein
Amino-acid ABC transporter bindingprotein ybeJ {ECO:0000313|EMBL:EFI60324.1}; TaxID=563045 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni S44.;"
SCNpilot_expt_500_bf_scaffold_192_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16321..17793)
DNA (1473bp) protein (491aa)
aspA; aspartate ammonia-lyase AspA (EC:4.3.1.1) rbh
Aspartate ammonia-lyase AspA {ECO:0000313|EMBL:AGU48007.1}; EC=4.3.1.1 {ECO:0000313|EMBL:AGU48007.1};; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
aspartate ammonia-lyase n=1 Tax=Variovorax paradoxus RepID=UPI00036D0EA4 rbh
SCNpilot_expt_500_bf_scaffold_192_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17969..18955)
DNA (987bp) protein (329aa)
Transcriptional regulator, LysR family n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CMH8_VARPS rbh
LysR family transcriptional regulator rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ACS17479.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_500_bf_scaffold_192_19
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19017..20459
DNA (1443bp) protein (481aa)
amidase; K01426 amidase [EC:3.5.1.4] rbh
Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit n=1 Tax=Variovorax sp. CF313 RepID=J2JMU7_9BURK rbh
Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit {ECO:0000313|EMBL:EJL69190.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_expt_500_bf_scaffold_192_20
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20570..21508)
DNA (939bp) protein (313aa)
Lactate dehydrogenase-like oxidoreductase n=1 Tax=Variovorax sp. CF313 RepID=J3CLM4_9BURK rbh
Lactate dehydrogenase-like oxidoreductase {ECO:0000313|EMBL:EJL74089.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase rbh
SCNpilot_expt_500_bf_scaffold_192_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21551..23383)
DNA (1833bp) protein (611aa)
ABC transporter related protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V9L7_VARPE rbh
Variovorax paradoxus strain MEDvA23 contig_79, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ22980.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
ABC transporter; K06147 ATP-binding cassette, subfamily B, bacterial rbh
SCNpilot_expt_500_bf_scaffold_192_22
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23395..23850
DNA (456bp) protein (152aa)
thioesterase n=1 Tax=Variovorax paradoxus RepID=UPI00036E570D
putative acyl-CoA hydrolase
Acyl-CoA hydrolase {ECO:0000313|EMBL:EJL74087.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_expt_500_bf_scaffold_192_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23861..25036)
DNA (1176bp) protein (392aa)
ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI0003807673 rbh
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein rbh
Extracellular ligand-binding receptor {ECO:0000313|EMBL:ADU35063.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_bf_scaffold_192_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25157..25921)
DNA (765bp) protein (255aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V9L4_VARPE rbh
Variovorax paradoxus strain MEDvA23 contig_79, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ22982.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
enoyL-CoA hydratase/isomerase rbh
SCNpilot_expt_500_bf_scaffold_192_25
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25958..26554)
DNA (597bp) protein (199aa)
DSBA oxidoreductase n=1 Tax=Variovorax paradoxus RepID=UPI00036539DE rbh
Variovorax paradoxus strain MEDvA23 contig_79, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ22983.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
dsba oxidoreductase rbh
SCNpilot_expt_500_bf_scaffold_192_26
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26581..27330)
DNA (750bp) protein (250aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V9L2_VARPE rbh
short-chain dehydrogenase/reductase sdr rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADU35060.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_bf_scaffold_192_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27333..28169)
DNA (837bp) protein (279aa)
acyl-CoA thioesterase n=1 Tax=Variovorax paradoxus RepID=UPI00037B6384 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADU35059.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_bf_scaffold_192_28
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28199..29104)
DNA (906bp) protein (302aa)
alpha/beta hydrolase n=1 Tax=Variovorax paradoxus RepID=UPI000376255B rbh
hydrolase rbh
Putative alpha/beta hydrolase {ECO:0000313|EMBL:EJL74081.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_expt_500_bf_scaffold_192_29
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29160..30356)
DNA (1197bp) protein (399aa)
3-ketoacyl-CoA thiolase (EC:2.3.1.16) rbh
3-ketoacyl-CoA thiolase {ECO:0000313|EMBL:AGU47995.1}; EC=2.3.1.16 {ECO:0000313|EMBL:AGU47995.1};; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
3-ketoacyl-CoA thiolase n=1 Tax=Variovorax paradoxus B4 RepID=T1X763_VARPD rbh
SCNpilot_expt_500_bf_scaffold_192_30
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30353..30769)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CLM0_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL74079.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
Displaying items 1-30 of 62 in total

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