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SCNpilot_expt_500_bf_scaffold_324

Search features with annotation key words

Displaying items 1-30 of 69 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_324_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3..128
DNA (126bp) protein (42aa)
electron transfer flavoprotein subunit beta n=1 Tax=Variovorax paradoxus RepID=UPI00037C56B0
etfA; electron transfer flavoprotein, subunit alpha
Electron transfer flavoprotein alpha subunit {ECO:0000313|EMBL:ACS19990.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_500_bf_scaffold_324_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

203..1993
DNA (1791bp) protein (597aa)
Putative acyl-CoA dehydrogenase n=1 Tax=Variovorax paradoxus B4 RepID=T1XDI7_VARPD rbh
Variovorax paradoxus strain MEDvA23 contig_132, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ16745.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
putative acyl-CoA dehydrogenase rbh
SCNpilot_expt_500_bf_scaffold_324_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2073..3035
DNA (963bp) protein (321aa)
2-nitropropane dioxygenase npd; K00459 nitronate monooxygenase [EC:1.13.12.16] rbh
2-nitropropane dioxygenase NPD n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UVX7_VARPE rbh
Variovorax paradoxus strain MEDvA23 contig_132, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ16744.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_expt_500_bf_scaffold_324_4
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3032..4207
DNA (1176bp) protein (392aa)
Putative acyltransferase n=1 Tax=Variovorax sp. CF313 RepID=J2L2Y4_9BURK rbh
Putative acyltransferase {ECO:0000313|EMBL:EJL79568.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
acyltransferase 3 rbh
SCNpilot_expt_500_bf_scaffold_324_5
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4363..6051
DNA (1689bp) protein (563aa)
Cysteine export CydDC family ABC transporter permease subunit/ATP-binding protein CydD n=1 Tax=Variovorax sp. CF313 RepID=J3CVX8_9BURK rbh
Cysteine export CydDC family ABC transporter permease subunit/ATP-binding protein CydD {ECO:0000313|EMBL:EJL79569.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
cydD; thiol reductant ABC exporter, CydD subunit rbh
SCNpilot_expt_500_bf_scaffold_324_6
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6048..7763
DNA (1716bp) protein (572aa)
Fused ATPase/permease component of ABC-type transporter involved in cytochrome bd biogenesis n=1 Tax=Variovorax sp. CF313 RepID=J2KHC7_9BURK rbh
Fused ATPase/permease component of ABC-type transporter involved in cytochrome bd biogenesis {ECO:0000313|EMBL:EJL79570.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative thiol reductant ABC exporter, CydC subunit rbh
SCNpilot_expt_500_bf_scaffold_324_7
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7811..9424
DNA (1614bp) protein (538aa)
cydA; cytochrome d ubiquinol oxidase, subunit 1 (EC:1.10.3.-) rbh
Cytochrome bd-type quinol oxidase, subunit 1 n=1 Tax=Variovorax sp. CF313 RepID=J3CWC8_9BURK rbh
Cytochrome bd-type quinol oxidase, subunit 1 {ECO:0000313|EMBL:EJL79571.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_expt_500_bf_scaffold_324_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9421..10575
DNA (1155bp) protein (385aa)
cydB; cytochrome d ubiquinol oxidase, subunit 2 (EC:1.10.3.-) rbh
Cytochrome d oxidase cyd, subunit II n=1 Tax=Variovorax sp. CF313 RepID=J2TLY3_9BURK rbh
Variovorax paradoxus strain MEDvA23 contig_132, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ16741.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_expt_500_bf_scaffold_324_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10596..10745
DNA (150bp) protein (50aa)
Putative cyd operon protein YbgT n=1 Tax=Variovorax paradoxus B4 RepID=T1XDZ0_VARPD
ybgT; putative cyd operon protein YbgT
Putative cyd operon protein YbgT {ECO:0000313|EMBL:AGU50544.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_bf_scaffold_324_10
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10800..11387)
DNA (588bp) protein (196aa)
Putative transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J3CVY1_9BURK rbh
Putative transcriptional regulator {ECO:0000313|EMBL:EJL79574.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
transcriptional regulator, ArsR family rbh
SCNpilot_expt_500_bf_scaffold_324_11
unknown

Not on your lists

comp(12354..12842)
DNA (489bp) protein (163aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_324_12
unknown

Not on your lists

comp(12849..13235)
DNA (387bp) protein (129aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_324_13
unknown

Not on your lists

comp(13440..13649)
DNA (210bp) protein (70aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_324_14
unknown

Not on your lists

comp(13650..14081)
DNA (432bp) protein (144aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_324_15
unknown

Not on your lists

comp(14850..15041)
DNA (192bp) protein (64aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_324_16
unknown

Not on your lists

comp(15753..15914)
DNA (162bp) protein (54aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_324_17
unknown

Not on your lists

comp(16170..16631)
DNA (462bp) protein (154aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_324_18
unknown

Not on your lists

comp(17472..17729)
DNA (258bp) protein (86aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_324_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17911..18357
DNA (447bp) protein (149aa)
transporter n=1 Tax=Variovorax paradoxus RepID=UPI0003818C65
outer membrane autotransporter barrel domain-containing protein
Outer membrane autotransporter barrel domain-containing protein {ECO:0000313|EMBL:AGU49808.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_bf_scaffold_324_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18385..19419)
DNA (1035bp) protein (345aa)
Transcriptional regulator, AraC family n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UVX9_VARPE rbh
AraC family transcriptional regulator rbh
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ADU36457.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_bf_scaffold_324_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19560..21119
DNA (1560bp) protein (520aa)
AMP-dependent synthetase and ligase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UVY0_VARPE rbh
AMP-dependent synthetase and ligase rbh
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ADU36458.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_bf_scaffold_324_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21167..22351
DNA (1185bp) protein (395aa)
lipid-transfer protein n=1 Tax=Variovorax paradoxus RepID=UPI00036C88A3 rbh
Variovorax paradoxus strain MEDvA23 contig_132, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ16736.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
thiolase rbh
SCNpilot_expt_500_bf_scaffold_324_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22365..22805
DNA (441bp) protein (147aa)
acyl dehydratase n=1 Tax=Variovorax paradoxus RepID=UPI000372BE3A
maoc-like dehydratase
MaoC-like dehydratase {ECO:0000313|EMBL:ADU36460.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_bf_scaffold_324_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22820..23239
DNA (420bp) protein (140aa)
MaoC family dehydratase n=1 Tax=Variovorax paradoxus RepID=UPI00035D7A39
maoc domain-containing protein dehydratase
MaoC domain protein dehydratase {ECO:0000313|EMBL:ADU36461.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_bf_scaffold_324_25
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23274..24104
DNA (831bp) protein (277aa)
short-chain dehydrogenase/reductase sdr; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] rbh
Short-chain dehydrogenase/reductase SDR n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UVY4_VARPE rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADU36462.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_bf_scaffold_324_26
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24167..24955
DNA (789bp) protein (263aa)
enoyl-CoA hydratase n=1 Tax=Variovorax paradoxus RepID=UPI000364E008 rbh
enoyL-CoA hydratase/isomerase rbh
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:ADU36463.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_bf_scaffold_324_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24942..25793)
DNA (852bp) protein (284aa)
Putative extracellular solute-binding protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XJZ5_VARPD rbh
Variovorax paradoxus strain MEDvA23 contig_14, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ34630.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
putative extracellular solute-binding protein rbh
SCNpilot_expt_500_bf_scaffold_324_28
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25825..26511)
DNA (687bp) protein (229aa)
PKHD-type hydroxylase PMI12_00569 {ECO:0000256|HAMAP-Rule:MF_00657}; EC=1.14.11.- {ECO:0000256|HAMAP-Rule:MF_00657};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
ybiX; Fe(II)-dependent oxygenase superfamily protein; K07336 PKHD-type hydroxylase [EC:1.14.11.-]
PKHD-type hydroxylase PMI12_00569 n=1 Tax=Variovorax sp. CF313 RepID=J3CWD0_9BURK rbh
SCNpilot_expt_500_bf_scaffold_324_29
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26540..28834)
DNA (2295bp) protein (765aa)
TonB-dependent siderophore receptor n=1 Tax=Variovorax sp. CF313 RepID=J2TLY7_9BURK rbh
TonB-dependent siderophore receptor {ECO:0000313|EMBL:EJL79577.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
rubA; rubredoxin RubA; K02014 iron complex outermembrane recepter protein rbh
SCNpilot_expt_500_bf_scaffold_324_30
Pseudomonas alcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29108..30232
DNA (1125bp) protein (375aa)
hypothetical protein; K03924 MoxR-like ATPase [EC:3.6.3.-] rbh
ATPase AAA n=1 Tax=Pseudomonas alcaligenes OT 69 RepID=U3H386_PSEAC rbh
ATPase AAA {ECO:0000313|EMBL:EQM66522.1}; TaxID=1333854 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas alcaligenes OT 69.;"
Displaying items 1-30 of 69 in total

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