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SCNpilot_expt_500_bf_scaffold_22

Search features with annotation key words

Displaying items 1-30 of 413 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_22_1
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(73..945)
DNA (873bp) protein (291aa)
drug/metabolite transporter permease n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002DE96DD rbh
Drug/metabolite transporter permease {ECO:0000313|EMBL:AHY59713.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_22_2
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1132..1425
DNA (294bp) protein (98aa)
Uncharacterized protein n=4 Tax=Stenotrophomonas maltophilia RepID=B2FHM2_STRMK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCH11875.1}; TaxID=1163399 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia D457.;"
SCNpilot_expt_500_bf_scaffold_22_3
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1557..1787
DNA (231bp) protein (77aa)
Hexameric tyrosine-coordinated heme protein (HTHP) n=1 Tax=Pseudomonas caeni RepID=UPI0003B75256
NODE_59, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ95956.1}; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_22_4
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1825..2628)
DNA (804bp) protein (268aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000363766B
Transmembrane protein {ECO:0000313|EMBL:EMI50797.1}; TaxID=1235458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia AU12-09.;"
putative transmembrane protein
SCNpilot_expt_500_bf_scaffold_22_5
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2625..2981)
DNA (357bp) protein (119aa)
Aldehyde-activating protein n=1 Tax=Stenotrophomonas maltophilia MF89 RepID=T5KNR2_STEMA
Aldehyde-activating protein {ECO:0000313|EMBL:EQM79990.1}; TaxID=1333853 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia MF89.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_22_6
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3089..4891
DNA (1803bp) protein (601aa)
Lipoprotein, putative n=1 Tax=Stenotrophomonas maltophilia D457 RepID=I0KLD3_STEMA rbh
Lipoprotein, putative {ECO:0000313|EMBL:CCH11872.1}; TaxID=1163399 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia D457.;"
lipoprotein rbh
SCNpilot_expt_500_bf_scaffold_22_7
unknown

Not on your lists

comp(4831..5055)
DNA (225bp) protein (75aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_22_8
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5091..5582
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Xanthomonas arboricola RepID=UPI0003025AEF
Uncharacterized protein {ECO:0000313|EMBL:GAE48700.1}; TaxID=1414836 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas arboricola pv. pruni str. MAFF 311562.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_22_9
Acinetobacter sp. NIPH 2168, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5690..6028
DNA (339bp) protein (113aa)
tRNA-binding protein n=1 Tax=Methylophilus RepID=UPI00037647FB
Uncharacterized protein {ECO:0000313|EMBL:ENX23714.1}; TaxID=1217706 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.;" source="Acinetobacter sp. NIPH 2168.;"
csaA; protein secretion chaperone
SCNpilot_expt_500_bf_scaffold_22_10
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6047..6298
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Acinetobacter sp. NIPH 713 RepID=N9KT55_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KFN46149.1}; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_22_11
R_OP11_45_11, Microgenomates, Bacteria

Not on your lists

6345..6824
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034D5A51
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_OP11_45_11_curated
SCNpilot_expt_500_bf_scaffold_22_12
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6890..7465
DNA (576bp) protein (192aa)
Putative uncharacterized protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X0K6_THIK1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG30652.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
SCNpilot_expt_500_bf_scaffold_22_13
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7560..9374)
DNA (1815bp) protein (605aa)
signal transduction histidine kinase (EC:2.7.3.-) rbh
Signal transduction histidine kinase {ECO:0000313|EMBL:AEI79451.1}; EC=2.7.3.- {ECO:0000313|EMBL:AEI79451.1};; TaxID=1042878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) (Ralstonia; eutropha).;"
Signal transduction histidine kinase n=1 Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=F8GQH9_CUPNN rbh
SCNpilot_expt_500_bf_scaffold_22_14
BJP_08E140C01_10KDA_Methylophilales_47_88, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9367..10017)
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Methylomonas sp. MK1 RepID=UPI00037FE326
LuxR family two component transcriptional regulator
Tax=BJP_08E140C01_10KDA_Methylophilales_47_88
SCNpilot_expt_500_bf_scaffold_22_15
Cellvibrio sp. BR, Cellvibrio, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10161..10838)
DNA (678bp) protein (226aa)
hypothetical protein n=1 Tax=Nevskia ramosa RepID=UPI0003B48E36
Uncharacterized protein {ECO:0000313|EMBL:EIK46514.1}; TaxID=1134474 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Cellvibrio.;" source="Cellvibrio sp. BR.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_22_16
Cellvibrio sp. BR, Cellvibrio, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10898..12124)
DNA (1227bp) protein (409aa)
hypothetical protein n=1 Tax=Nevskia ramosa RepID=UPI0003B3AFB0 rbh
Uncharacterized protein {ECO:0000313|EMBL:EIK46513.1}; TaxID=1134474 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Cellvibrio.;" source="Cellvibrio sp. BR.;"
SCNpilot_expt_500_bf_scaffold_22_17
Aquabacterium sp. NJ1, Aquabacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12308..12661
DNA (354bp) protein (118aa)
hypothetical protein n=1 Tax=Verminephrobacter aporrectodeae RepID=UPI0002377375
Uncharacterized protein {ECO:0000313|EMBL:KGM41026.1}; TaxID=1538295 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Aquabacterium.;" source="Aquabacterium sp. NJ1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_22_18
Lysobacter defluvii, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12800..14632)
DNA (1833bp) protein (611aa)
ABC transporter related protein n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WWT6_PSEUU rbh
Multidrug ABC transporter ATP-binding protein {ECO:0000313|EMBL:KGO99599.1}; TaxID=1385515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter defluvii IMMIB APB-9 = DSM 18482.;"
ABC transporter; K06147 ATP-binding cassette, subfamily B, bacterial rbh
SCNpilot_expt_500_bf_scaffold_22_19
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14896..16506)
DNA (1611bp) protein (537aa)
beta-lactamase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000382638E rbh
Beta-lactamase {ECO:0000313|EMBL:AHY59720.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
putative beta-lactamase rbh
SCNpilot_expt_500_bf_scaffold_22_20
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16574..17005
DNA (432bp) protein (144aa)
glyoxalase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00030F1BE1
Glyoxalase {ECO:0000313|EMBL:AKC85644.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
putative glyoxylase/belomycin resistance protein
SCNpilot_expt_500_bf_scaffold_22_21
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17062..17901
DNA (840bp) protein (280aa)
hypothetical protein n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI00035E26F8 rbh
Uncharacterized protein {ECO:0000313|EMBL:AJC47836.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_22_22
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17948..18871
DNA (924bp) protein (308aa)
Transmembrane protein n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5TNL8_STEMA rbh
Transmembrane protein {ECO:0000313|EMBL:EMI50787.1}; TaxID=1235458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia AU12-09.;"
drug/metabolite transporter permease rbh
SCNpilot_expt_500_bf_scaffold_22_23
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18878..19942)
DNA (1065bp) protein (355aa)
diguanylate cyclase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00030EAD86 rbh
Diguanylate cyclase {ECO:0000313|EMBL:AHY59725.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
putative GGDEF and GAF signalling protein rbh
SCNpilot_expt_500_bf_scaffold_22_24
Xanthomonas albilineans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20033..20755)
DNA (723bp) protein (241aa)
rluF; rrna pseudouridine synthase (EC:5.4.99.-); K06182 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] rbh
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887, ECO:0000313|EMBL:CBA16535.1};; TaxID=380358 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas albilineans (strain GPE PC73 / CFBP 7063).;"
Pseudouridine synthase n=1 Tax=Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) RepID=D2U8W9_XANAP rbh
SCNpilot_expt_500_bf_scaffold_22_25
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20763..22472)
DNA (1710bp) protein (570aa)
Diguanylate cyclase n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0K365_STEMA rbh
diguanylate cyclase rbh
Diguanylate cyclase {ECO:0000313|EMBL:KDE91531.1}; TaxID=1451188 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia M30.;"
SCNpilot_expt_500_bf_scaffold_22_26
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22589..24511)
DNA (1923bp) protein (641aa)
ATP-dependent RNA helicase DeaD {ECO:0000256|HAMAP-Rule:MF_00964}; EC=3.6.4.13 {ECO:0000256|HAMAP-Rule:MF_00964};; Cold-shock DEAD box protein A {ECO:0000256|HAMAP-Rule:MF_00964}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
DEAD/DEAH box helicase; K05592 ATP-dependent RNA helicase DeaD [EC:3.6.4.13] rbh
RNA helicase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000300A86F rbh
SCNpilot_expt_500_bf_scaffold_22_27
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24852..25064
DNA (213bp) protein (71aa)
RNA-binding protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00031D71FA
Stenotrophomonas maltophilia strain ZBG7B contig_111, whole genome shotgun sequence {ECO:0000313|EMBL:KIP80185.1}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_22_28
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25081..26256)
DNA (1176bp) protein (392aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002D6044E rbh
Uncharacterized protein {ECO:0000313|EMBL:AHY59731.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_22_29
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26386..27513)
DNA (1128bp) protein (376aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00031AF6B8 rbh
Uncharacterized protein {ECO:0000313|EMBL:AHY59734.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_22_30
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27677..29146
DNA (1470bp) protein (490aa)
DNA methylation and regulatory protein Ada; K13529 AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] rbh
DNA methylase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003039DA0 rbh
DNA methylase {ECO:0000313|EMBL:AHY59735.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
Displaying items 1-30 of 413 in total

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