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SCNpilot_expt_500_bf_scaffold_112

Search features with annotation key words

Displaying items 1-30 of 202 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_112_1
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44..814)
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GSQ3_THISH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL72957.1}; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
SCNpilot_expt_500_bf_scaffold_112_2
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1118..1468)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA010 RepID=U9MPE9_PSEAI
Lipoprotein {ECO:0000313|EMBL:GAO23367.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_112_3
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3124..4872
DNA (1749bp) protein (583aa)
Modification methylase PaeR7I n=2 Tax=Gammaproteobacteria RepID=S1HWV4_ECOLX rbh
hypothetical protein rbh
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
SCNpilot_expt_500_bf_scaffold_112_4
Desulfovibrio magneticus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4924..5613
DNA (690bp) protein (230aa)
Type II restriction enzyme n=1 Tax=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) RepID=C4XNH9_DESMR
type II restriction enzyme
Type II restriction enzyme {ECO:0000313|EMBL:BAH74954.1}; TaxID=573370 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1).;"
SCNpilot_expt_500_bf_scaffold_112_5
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5626..7818
DNA (2193bp) protein (731aa)
Stem cell self-renewal protein Piwi domain-containing protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4ML19_9BURK rbh
Stem cell self-renewal protein Piwi domain-containing protein {ECO:0000313|EMBL:EIK89909.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
piwi domain-containing protein rbh
SCNpilot_expt_500_bf_scaffold_112_6
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

Not on your lists

7806..8963
DNA (1158bp) protein (386aa)
Uncharacterized protein id=4237051 bin=GWC2_Nitrospirae_57_13 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8 rbh
hypothetical protein
Tax=GWC2_Nitrospirae_57_13_curated
SCNpilot_expt_500_bf_scaffold_112_7
Aeromonas hydrophila, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9109..11157)
DNA (2049bp) protein (683aa)
ParB-like partition protein n=1 Tax=Aeromonas hydrophila SSU RepID=K1JAJ3_AERHY rbh
ParB-like partition protein {ECO:0000313|EMBL:EKB27261.1}; TaxID=1073377 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas hydrophila SSU.;"
putative chromosome segregation protein; K03497 chromosome partitioning protein, ParB family rbh
SCNpilot_expt_500_bf_scaffold_112_8
Bordetella sp. 8-296-03, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11176..12030)
DNA (855bp) protein (285aa)
Gene 32 protein n=2 Tax=Burkholderia multivorans RepID=A9AE99_BURM1 rbh
PF06067 domain protein {ECO:0000313|EMBL:KCB38660.1}; TaxID=1331258 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 8-296-03.;"
gene 32 protein rbh
SCNpilot_expt_500_bf_scaffold_112_9
Pseudomonas denitrificans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12737..13123)
DNA (387bp) protein (129aa)
Putative vacuolar-type H+ATPase subunit A n=1 Tax=Pseudomonas denitrificans ATCC 13867 RepID=M4WX92_PSEDE
putative vacuolar-type H+ATPase subunit A
Putative vacuolar-type H+ATPase subunit A {ECO:0000313|EMBL:AGI23846.1}; TaxID=1294143 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas denitrificans ATCC 13867.;"
SCNpilot_expt_500_bf_scaffold_112_10
Burkholderia multivorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13403..13912)
DNA (510bp) protein (170aa)
DNA repair protein n=2 Tax=Burkholderia multivorans RepID=A9AE97_BURM1 rbh
DNA repair protein RadC; K03630 DNA repair protein RadC rbh
PF04002 family protein {ECO:0000313|EMBL:EJO56652.1}; TaxID=985078 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia multivorans CF2.;"
SCNpilot_expt_500_bf_scaffold_112_11
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14319..14645
DNA (327bp) protein (109aa)
ArsR family transcriptional regulator n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036ECFE7
ArsR family transcriptional regulator
ArsR family transcriptional regulator {ECO:0000313|EMBL:GAD24911.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCNpilot_expt_500_bf_scaffold_112_12
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14650..15138
DNA (489bp) protein (163aa)
ArsR family transcriptional regulator n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035CEB3D rbh
Protein tyrosine phosphatase {ECO:0000313|EMBL:GAD24912.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
putative protein-tyrosine-phosphatase rbh
SCNpilot_expt_500_bf_scaffold_112_13
Burkholderia multivorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15149..16225
DNA (1077bp) protein (359aa)
ACR3 family arsenite transporter n=2 Tax=Burkholderia multivorans RepID=A9AE94_BURM1 rbh
ACR3 family arsenite transporter; K03325 arsenite transporter, ACR3 family rbh
Arsenical-resistance protein {ECO:0000313|EMBL:EJO56667.1}; TaxID=985078 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia multivorans CF2.;"
SCNpilot_expt_500_bf_scaffold_112_14
Bordetella sp. 8-296-03, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16242..16664
DNA (423bp) protein (141aa)
Arsenate reductase {ECO:0000256|RuleBase:RU362029}; EC=1.20.4.1 {ECO:0000256|RuleBase:RU362029};; TaxID=1331258 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 8-296-03.;"
arsenate reductase; K00537 arsenate reductase [EC:1.20.4.1]
arsenate reductase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000380FDA2
SCNpilot_expt_500_bf_scaffold_112_15
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16657..17193
DNA (537bp) protein (179aa)
Arsenical resistance protein ArsH 1 n=3 Tax=Proteobacteria RepID=E3HKQ5_ACHXA
arsH1; arsenic resistance protein ArsH; K11811 arsenical resistance protein ArsH
Arsenical resistance protein ArsH 1 {ECO:0000313|EMBL:ADP14430.1}; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
SCNpilot_expt_500_bf_scaffold_112_16
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17193..17318
DNA (126bp) protein (42aa)
Arsenical resistance protein ArsH n=1 Tax=Pseudomonas aeruginosa BWHPSA010 RepID=U9MBS1_PSEAI
Arsenical resistance protein ArsH {ECO:0000313|EMBL:KDD60152.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
NADPH-dependent FMN reductase; K11811 arsenical resistance protein ArsH
SCNpilot_expt_500_bf_scaffold_112_17
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17318..18520
DNA (1203bp) protein (401aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA010 RepID=U9MC14_PSEAI rbh
Chromate efflux transporter {ECO:0000313|EMBL:KDD60147.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
chromate transporter
SCNpilot_expt_500_bf_scaffold_112_18
Burkholderia multivorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18682..19746)
DNA (1065bp) protein (355aa)
PF06250 family protein n=1 Tax=Burkholderia multivorans CF2 RepID=J5BQT9_9BURK rbh
PF06250 family protein {ECO:0000313|EMBL:EJO56658.1}; TaxID=985078 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia multivorans CF2.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_112_19
Burkholderia multivorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19743..20942)
DNA (1200bp) protein (400aa)
Site-specific recombinase, phage integrase family n=1 Tax=Burkholderia multivorans CF2 RepID=J4R1N1_9BURK rbh
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EJO56669.1}; TaxID=985078 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia multivorans CF2.;"
tyrosine-based site-specific recombinase CMGI-2 rbh
SCNpilot_expt_500_bf_scaffold_112_20
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21207..22622
DNA (1416bp) protein (472aa)
Poly(A) polymerase I {ECO:0000256|HAMAP-Rule:MF_00957}; Short=PAP I {ECO:0000256|HAMAP-Rule:MF_00957};; EC=2.7.7.19 {ECO:0000256|HAMAP-Rule:MF_00957};; TaxID=1118157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia RA8.;"
poly(A) polymerase (EC:2.7.7.19); K00970 poly(A) polymerase [EC:2.7.7.19] rbh
Poly(A) polymerase I n=1 Tax=Stenotrophomonas maltophilia RA8 RepID=M5CWW9_STEMA rbh
SCNpilot_expt_500_bf_scaffold_112_21
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22628..23116
DNA (489bp) protein (163aa)
folK; 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (EC:2.7.6.3); K00950 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase n=1 Tax=Xanthomonas campestris pv. vesicatoria (strain 85-10) RepID=Q3BUL7_XANC5
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase {ECO:0000313|EMBL:KHD59963.1}; TaxID=317013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. phaseoli.;"
SCNpilot_expt_500_bf_scaffold_112_22
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23148..23963
DNA (816bp) protein (272aa)
3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725}; EC=2.1.2.11 {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725};; Ketopantoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC:2.1.2.11); K00606 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] rbh
3-methyl-2-oxobutanoate hydroxymethyltransferase n=1 Tax=Stenotrophomonas maltophilia MF89 RepID=T5KVA4_STEMA rbh
SCNpilot_expt_500_bf_scaffold_112_23
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23960..24802
DNA (843bp) protein (281aa)
Pantothenate synthetase {ECO:0000256|HAMAP-Rule:MF_00158}; Short=PS {ECO:0000256|HAMAP-Rule:MF_00158};; EC=6.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00158};; Pantoate--beta-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00158}; Pantoate-activating enzyme {ECO:0000256|HAMAP-Rule:MF_00158}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
pantoate/beta-alanine ligase; K01918 pantoate--beta-alanine ligase [EC:6.3.2.1] rbh
pantoate--beta-alanine ligase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F18746 rbh
SCNpilot_expt_500_bf_scaffold_112_24
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24984..25364
DNA (381bp) protein (127aa)
panD; aspartate 1-decarboxylase (EC:4.1.1.11); K01579 aspartate 1-decarboxylase [EC:4.1.1.11]
Aspartate 1-decarboxylase {ECO:0000256|HAMAP-Rule:MF_00446, ECO:0000256|SAAS:SAAS00097809}; EC=4.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00446, ECO:0000256|SAAS:SAAS00097718};; Aspartate alpha-decarboxylase {ECO:0000256|HAMAP-Rule:MF_00446}; TaxID=1451188 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia M30.;"
Aspartate 1-decarboxylase n=1 Tax=Stenotrophomonas maltophilia SKK35 RepID=M5CLJ7_STEMA
SCNpilot_expt_500_bf_scaffold_112_25
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25361..26875
DNA (1515bp) protein (505aa)
glucose-6-phosphate isomerase (EC:5.3.1.9); K01810 glucose-6-phosphate isomerase [EC:5.3.1.9] rbh
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612};; Phosphoglucose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; Phosphohexose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; TaxID=868597 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Steno
Glucose-6-phosphate isomerase n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0JVL2_STEMA rbh
SCNpilot_expt_500_bf_scaffold_112_26
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26996..28033)
DNA (1038bp) protein (346aa)
AraC family transcriptional regulator n=1 Tax=Rhodanobacter sp. 115 RepID=I4W3D5_9GAMM
AraC family transcriptional regulator {ECO:0000313|EMBL:AHX14886.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
AraC family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_112_27
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28155..29372
DNA (1218bp) protein (406aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. EGD-AK9 RepID=U1ZIZ9_9PSED
Uncharacterized protein {ECO:0000313|EMBL:EYR67758.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_112_28
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29383..30507
DNA (1125bp) protein (375aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W320_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR67757.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_112_29
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30584..33073
DNA (2490bp) protein (830aa)
TonB-dependent receptor n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B5C34D
TonB-denpendent receptor {ECO:0000313|EMBL:EYR67756.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
TonB dependent receptor
SCNpilot_expt_500_bf_scaffold_112_30
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33196..34602
DNA (1407bp) protein (469aa)
aldehyde dehydrogenase (EC:1.2.1.-); K00154 coniferyl-aldehyde dehydrogenase [EC:1.2.1.68] rbh
Aldehyde dehydrogenase n=1 Tax=Xanthomonas translucens DAR61454 RepID=L7H9Q8_XANCT rbh
Aldehyde dehydrogenase {ECO:0000256|PIRNR:PIRNR036492}; TaxID=1205753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens DAR61454.;"
Displaying items 1-30 of 202 in total

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