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SCNpilot_expt_500_bf_scaffold_209

Search features with annotation key words

Displaying items 61-82 of 82 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_209_61
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(68602..68985)
DNA (384bp) protein (128aa)
Protein ApaG n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5TQ69_STEMA
Protein ApaG {ECO:0000256|HAMAP-Rule:MF_00791, ECO:0000256|SAAS:SAAS00014786}; TaxID=1235458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia AU12-09.;"
apaG; ApaG protein; K06195 ApaG protein
SCNpilot_expt_500_bf_scaffold_209_62
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(69022..69840)
DNA (819bp) protein (273aa)
ksgA; dimethyladenosine transferase; K02528 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] rbh
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Stenotrophomonas maltophilia (strain K279a) RepID=B2FPG5_STRMK rbh
SCNpilot_expt_500_bf_scaffold_209_63
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(69837..70817)
DNA (981bp) protein (327aa)
4-hydroxythreonine-4-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154}; EC=1.1.1.262 {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154};; 4-(phosphohydroxy)-L-threonine dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
4-hydroxythreonine-4-phosphate dehydrogenase (EC:1.1.1.262); K00097 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] rbh
4-hydroxythreonine-4-phosphate dehydrogenase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00035C7C91 rbh
SCNpilot_expt_500_bf_scaffold_209_64
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(70822..72180)
DNA (1359bp) protein (453aa)
surA; putative survival protein SurA; K03771 peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] rbh
molecular chaperone SurA n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F363C8 rbh
Chaperone SurA {ECO:0000256|HAMAP-Rule:MF_01183, ECO:0000256|SAAS:SAAS00043023}; Peptidyl-prolyl cis-trans isomerase SurA {ECO:0000256|HAMAP-Rule:MF_01183}; Rotamase SurA {ECO:0000256|HAMAP-Rule:MF_01183}; Flags: Precursor;; TaxID=522373 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain K279a).;"
SCNpilot_expt_500_bf_scaffold_209_65
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(72177..74549)
DNA (2373bp) protein (791aa)
LPS-assembly protein LptD n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5TQG8_STEMA rbh
LPS-assembly protein LptD {ECO:0000256|HAMAP-Rule:MF_01411, ECO:0000256|SAAS:SAAS00019908}; Flags: Precursor;; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
ostA; organic solvent tolerance protein; K04744 LPS-assembly protein rbh
SCNpilot_expt_500_bf_scaffold_209_66
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(74709..75626)
DNA (918bp) protein (306aa)
acetoin utilization protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003118BE6 rbh
Acetoin utilization protein {ECO:0000313|EMBL:AHY60235.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
acetoin utilization family protein rbh
SCNpilot_expt_500_bf_scaffold_209_67
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(75660..76214)
DNA (555bp) protein (185aa)
adenosyl transferase; K00798 cob(I)alamin adenosyltransferase [EC:2.5.1.17] rbh
ATP--cobalamin adenosyltransferase n=1 Tax=Xanthomonas RepID=UPI00037EDCBF rbh
ATP--cobalamin adenosyltransferase {ECO:0000313|EMBL:AHY60234.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
SCNpilot_expt_500_bf_scaffold_209_68
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(76228..76809)
DNA (582bp) protein (194aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000318193C
Stenotrophomonas maltophilia strain ZBG7B contig_72, whole genome shotgun sequence {ECO:0000313|EMBL:KIP82267.1}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
Optional hypothetical component of the B12 transporter BtuM
SCNpilot_expt_500_bf_scaffold_209_69
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

76927..78138
DNA (1212bp) protein (404aa)
2-octaprenyl-6-methoxyphenyl hydroxylase {ECO:0000313|EMBL:CCP14812.1}; EC=1.14.13.- {ECO:0000313|EMBL:CCP14812.1};; TaxID=1118157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia RA8.;"
2-octaprenyl-6-methoxyphenyl hydroxylase; K03185 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-] rbh
2-octaprenyl-6-methoxyphenyl hydroxylase n=1 Tax=Stenotrophomonas maltophilia RA8 RepID=M5D6I3_STEMA rbh
SCNpilot_expt_500_bf_scaffold_209_70
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

78135..79313
DNA (1179bp) protein (393aa)
visC; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; K03184 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [EC:1.14.13.-] rbh
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F9115A rbh
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase {ECO:0000313|EMBL:AHY60231.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
SCNpilot_expt_500_bf_scaffold_209_71
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(79320..79724)
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Xanthomonas translucens DAR61454 RepID=L7FV24_XANCT
Uncharacterized protein {ECO:0000313|EMBL:ELP97355.1}; TaxID=1205753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens DAR61454.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_209_72
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(79775..80086)
DNA (312bp) protein (104aa)
hypothetical protein n=1 Tax=Xanthomonas RepID=UPI000262AFBD
Uncharacterized protein {ECO:0000313|EMBL:AJC45835.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_209_73
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(80212..80934)
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=Xanthomonas sp. M97 RepID=UPI0003A4E93F rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CCF67066.1}; TaxID=1085630 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. punicae str. LMG 859.;"
SCNpilot_expt_500_bf_scaffold_209_74
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(81016..81897)
DNA (882bp) protein (294aa)
gluconolactonase n=1 Tax=Xanthomonas sp. M97 RepID=UPI0003B50FCA rbh
Gluconolactonase {ECO:0000313|EMBL:AKC88371.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_209_75
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(82026..83075)
DNA (1050bp) protein (350aa)
Ribosomal RNA large subunit methyltransferase M {ECO:0000256|HAMAP-Rule:MF_01551, ECO:0000256|SAAS:SAAS00058276}; EC=2.1.1.186 {ECO:0000256|HAMAP-Rule:MF_01551, ECO:0000256|SAAS:SAAS00058274};; 23S rRNA (cytidine2498-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01551}; 23S rRNA 2'-O-ribose methyltransferase RlmM {ECO:0000256|HAMAP-Rule:MF_01551}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophi
putative RNA 2'-O-ribose methyltransferase; K06968 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186] rbh
23S rRNA methyltransferase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002FA7E19 rbh
SCNpilot_expt_500_bf_scaffold_209_76
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(83134..83694)
DNA (561bp) protein (187aa)
Cytidine and deoxycytidylate deaminase family protein n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5TQ47_STEMA rbh
Cytidine and deoxycytidylate deaminase family protein {ECO:0000313|EMBL:EMI51312.1}; TaxID=1235458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia AU12-09.;"
zinc-binding CMP/dCMP deaminase rbh
SCNpilot_expt_500_bf_scaffold_209_77
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(83867..85618)
DNA (1752bp) protein (584aa)
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00126}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
glnS; glutaminyl-tRNA synthetase (EC:6.1.1.18); K01886 glutaminyl-tRNA synthetase [EC:6.1.1.18] rbh
Glutamine--tRNA ligase n=1 Tax=Stenotrophomonas maltophilia D457 RepID=I0KJQ9_STEMA rbh
SCNpilot_expt_500_bf_scaffold_209_78
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

85718..86386
DNA (669bp) protein (223aa)
Uncharacterized protein {ECO:0000313|EMBL:KFN50523.1}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
Glutathione S-transferase id=2643651 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
glutathione S-transferase
SCNpilot_expt_500_bf_scaffold_209_79
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

86420..86686
DNA (267bp) protein (89aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000309B102
Uncharacterized protein {ECO:0000313|EMBL:AHY60226.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_209_80
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

86697..87368
DNA (672bp) protein (224aa)
methionine sulfoxide reductase A; K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] rbh
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UQM3_PSEUP rbh
SCNpilot_expt_500_bf_scaffold_209_81
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

87373..87882
DNA (510bp) protein (170aa)
NAD(P)H dehydrogenase (Quinone) n=1 Tax=Acidovorax sp. NO-1 RepID=H0BT94_9BURK
flavodoxin/nitric oxide synthase
Flavodoxin/nitric oxide synthase {ECO:0000313|EMBL:ACS65573.1}; TaxID=428406 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii (strain 12D).;"
SCNpilot_expt_500_bf_scaffold_209_82
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(87989..88294)
DNA (306bp) protein (102aa)
Transaldolase {ECO:0000256|SAAS:SAAS00118670}; EC=2.2.1.2 {ECO:0000256|SAAS:SAAS00118670};; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
transaldolase B (EC:2.2.1.2); K00616 transaldolase [EC:2.2.1.2]
Transaldolase n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L0J4_9GAMM
Displaying items 61-82 of 82 in total

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