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SCNpilot_expt_500_bf_scaffold_212

Search features with annotation key words

Displaying items 1-30 of 109 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_212_1
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..161
DNA (159bp) protein (53aa)
Conjugative transfer protein TrbG n=1 Tax=Thauera terpenica 58Eu RepID=S9ZJU3_9RHOO
P-type conjugative transfer protein TrbG; K03204 type IV secretion system protein VirB9
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
SCNpilot_expt_500_bf_scaffold_212_2
Aeromonas hydrophila, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

164..1441
DNA (1278bp) protein (426aa)
conjugative transfer protein TrbI n=1 Tax=Pseudomonas alcaliphila RepID=UPI0002FE270F rbh
Uncharacterized protein {ECO:0000313|EMBL:EKB27230.1}; TaxID=1073377 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas hydrophila SSU.;"
conjugation TrbI family protein; K03195 type IV secretion system protein VirB10 rbh
SCNpilot_expt_500_bf_scaffold_212_3
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1438..1683
DNA (246bp) protein (82aa)
Uncharacterized protein n=5 Tax=Proteobacteria RepID=A0KUQ7_SHESA
hypothetical protein
Conjugal transfer protein {ECO:0000313|EMBL:EVT87449.1}; TaxID=1441931 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA09.;"
SCNpilot_expt_500_bf_scaffold_212_4
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1692..3077)
DNA (1386bp) protein (462aa)
Periplasmic sensor signal transduction histidine kinase; K02484 two-component system, OmpR family, sensor kinase [EC:2.7.13.3] rbh
Periplasmic sensor signal transduction histidine kinase n=1 Tax=Ralstonia sp. PBA RepID=I9W4X4_9RALS rbh
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
SCNpilot_expt_500_bf_scaffold_212_5
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3074..3733)
DNA (660bp) protein (220aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J3H9_POLGS rbh
Two component transcriptional regulator, winged helix family; K02483 two-component system, OmpR family, response regulator rbh
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
SCNpilot_expt_500_bf_scaffold_212_6
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3865..4257
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Ralstonia sp. PBA RepID=I9W4T9_9RALS
Uncharacterized protein {ECO:0000313|EMBL:EIZ03472.1}; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_212_7
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4268..5536
DNA (1269bp) protein (423aa)
Oxidoreductase, flavocytochrome subunit n=1 Tax=Ralstonia sp. PBA RepID=I9BUT4_9RALS rbh
Oxidoreductase, flavocytochrome subunit {ECO:0000313|EMBL:EIZ03471.1}; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
oxidoreductase, flavocytochrome subunit
SCNpilot_expt_500_bf_scaffold_212_8
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5588..6058
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Ralstonia sp. PBA RepID=I9KTA4_9RALS
Tat (Twin-arginine translocation) pathway signal sequence domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
SCNpilot_expt_500_bf_scaffold_212_9
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6080..8287
DNA (2208bp) protein (736aa)
oxidoreductase FAD-binding subunit; K00380 sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2] rbh
Oxidoreductase, FAD-binding, putative n=1 Tax=Ralstonia sp. PBA RepID=I9W4W9_9RALS rbh
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
SCNpilot_expt_500_bf_scaffold_212_10
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8268..9245
DNA (978bp) protein (326aa)
ApbE-like lipoprotein n=1 Tax=Ralstonia sp. PBA RepID=I9BU91_9RALS rbh
ApbE-like lipoprotein; K03734 thiamine biosynthesis lipoprotein rbh
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
SCNpilot_expt_500_bf_scaffold_212_11
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9682..10005
DNA (324bp) protein (108aa)
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein n=7 Tax=Stenotrophomonas RepID=G0JVK4_STEMA
4Fe-4S ferredoxin; K05524 ferredoxin
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein {ECO:0000313|EMBL:AEM50890.1}; TaxID=868597 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia JV3.;"
SCNpilot_expt_500_bf_scaffold_212_12
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10140..10649)
DNA (510bp) protein (170aa)
hypothetical protein n=1 Tax=Xanthomonadaceae RepID=UPI00029B3B2F
Uncharacterized protein {ECO:0000313|EMBL:EZP43274.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_212_13
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10681..11574)
DNA (894bp) protein (298aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=1183154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia Ab55555.;"
dapA; dihydrodipicolinate synthase (EC:4.2.1.52); K01714 dihydrodipicolinate synthase [EC:4.2.1.52] rbh
dihydrodipicolinate synthase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000381F64A rbh
SCNpilot_expt_500_bf_scaffold_212_14
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11689..12297
DNA (609bp) protein (203aa)
Glycine cleavage system transcriptional repressor n=1 Tax=Stenotrophomonas maltophilia SKK35 RepID=M5CSK3_STEMA rbh
putative glycine cleavage system transcriptional repressor; K03567 glycine cleavage system transcriptional repressor rbh
Putative glycine cleavage system transcriptional repressor {ECO:0000313|EMBL:CAQ45293.1}; TaxID=522373 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain K279a).;"
SCNpilot_expt_500_bf_scaffold_212_15
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12376..12855
DNA (480bp) protein (160aa)
alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; K03564 peroxiredoxin Q/BCP [EC:1.11.1.15]
peroxiredoxin n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002EF28C2
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen {ECO:0000313|EMBL:AEM50886.1}; TaxID=868597 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia JV3.;"
SCNpilot_expt_500_bf_scaffold_212_16
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12937..14337
DNA (1401bp) protein (467aa)
Predicted ATPase related to phosphate starvation-inducible protein PhoH n=1 Tax=Stenotrophomonas maltophilia D457 RepID=I0KMG4_STEMA rbh
ATPase related to phosphate starvation-inducible protein PhoH; K07175 PhoH-like ATPase rbh
Phosphate starvation protein PhoH {ECO:0000313|EMBL:KDE89107.1}; TaxID=1451188 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia M30.;"
SCNpilot_expt_500_bf_scaffold_212_17
unknown

Not on your lists

14380..14610
DNA (231bp) protein (77aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_212_18
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14639..15133
DNA (495bp) protein (165aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00031C88A4
Uncharacterized protein {ECO:0000313|EMBL:AHY59472.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_212_19
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15159..15833
DNA (675bp) protein (225aa)
membrane protein n=1 Tax=Xanthomonadaceae RepID=UPI00029B10E2 rbh
Membrane protein {ECO:0000313|EMBL:AHY59473.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_212_20
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15869..16678
DNA (810bp) protein (270aa)
thiD; phosphomethylpyrimidine kinase (EC:2.7.4.7); K00941 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] rbh
phosphomethylpyrimidine kinase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003128CDB rbh
Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:KKD57424.1}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
SCNpilot_expt_500_bf_scaffold_212_21
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16675..17517
DNA (843bp) protein (281aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E2FF43 rbh
Uncharacterized protein {ECO:0000313|EMBL:AJC47437.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_212_22
unknown

Not on your lists

comp(17688..17918)
DNA (231bp) protein (77aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_212_23
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(18016..20712)
DNA (2697bp) protein (899aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897, ECO:0000313|EMBL:CCH13247.1}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897, ECO:0000313|EMBL:CCH13247.1};; TaxID=1163399 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia D457.;"
gyrA; DNA gyrase subunit A (EC:5.99.1.3); K02469 DNA gyrase subunit A [EC:5.99.1.3] rbh
DNA gyrase subunit A n=1 Tax=Stenotrophomonas maltophilia D457 RepID=I0KQA7_STEMA rbh
SCNpilot_expt_500_bf_scaffold_212_24
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20947..22011)
DNA (1065bp) protein (355aa)
Methylthioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; Short=M1Pi {ECO:0000256|HAMAP-Rule:MF_01678};; Short=MTR-1-P isomerase {ECO:0000256|HAMAP-Rule:MF_01678};; EC=5.3.1.23 {ECO:0000256|HAMAP-Rule:MF_01678};; S-methyl-5-thioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; TaxID=92824 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. cannabis.;"
mtnA; methylthioribose-1-phosphate isomerase (EC:5.3.1.23); K08963 methylthioribose-1-phosphate isomerase [EC:5.3.1.23] rbh
Methylthioribose-1-phosphate isomerase n=1 Tax=Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122 RepID=D4SWI9_9XANT rbh
SCNpilot_expt_500_bf_scaffold_212_25
Xanthomonas vasicola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22035..22730)
DNA (696bp) protein (232aa)
Putative uncharacterized protein n=1 Tax=Xanthomonas oryzae pv. oryzicola BLS256 RepID=G7TAQ0_9XANT
Uncharacterized protein {ECO:0000313|EMBL:KGR58739.1}; TaxID=56459 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas vasicola.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_212_26
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22913..23857)
DNA (945bp) protein (315aa)
Elongation factor P--(R)-beta-lysine ligase {ECO:0000256|SAAS:SAAS00088906}; EC=6.3.1.- {ECO:0000256|SAAS:SAAS00088909};; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
lysine--tRNA ligase (EC:6.1.1.6); K04568 lysyl-tRNA synthetase, class II [EC:6.1.1.6] rbh
lysyl-tRNA synthetase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002DB00BB rbh
SCNpilot_expt_500_bf_scaffold_212_27
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23854..24330)
DNA (477bp) protein (159aa)
GCN5 family acetyltransferase n=1 Tax=Xanthomonas sacchari RepID=UPI000262AB54
Stenotrophomonas maltophilia strain ZBG7B contig_43, whole genome shotgun sequence {ECO:0000313|EMBL:KIP85971.1}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
GCN5-related N-acetyltransferase
SCNpilot_expt_500_bf_scaffold_212_28
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24327..26807)
DNA (2481bp) protein (827aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=1235458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia AU12-09.;"
ligA; NAD-dependent DNA ligase LigA; K01972 DNA ligase (NAD+) [EC:6.5.1.2] rbh
DNA ligase n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5TV33_STEMA rbh
SCNpilot_expt_500_bf_scaffold_212_29
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26914..27648)
DNA (735bp) protein (245aa)
cell division protein ZipA n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F94A53 rbh
Cell division protein ZipA {ECO:0000256|RuleBase:RU003612}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
zipA; cell division protein ZipA; K03528 cell division protein ZipA rbh
SCNpilot_expt_500_bf_scaffold_212_30
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27695..31198)
DNA (3504bp) protein (1168aa)
chromosome partitioning protein Smc n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002DF4A3D rbh
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
putative chromosome partition protein; K03529 chromosome segregation protein rbh
Displaying items 1-30 of 109 in total

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