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SCNpilot_expt_500_bf_scaffold_203

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_203_1
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(89..910)
DNA (822bp) protein (274aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00015172}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00015172};; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
PpiC-type peptidyl-prolyl cis-trans isomerase; K03769 peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
peptidyl-prolyl cis-trans isomerase n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI00037F9F8B
SCNpilot_expt_500_bf_scaffold_203_2
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(972..1658)
DNA (687bp) protein (229aa)
respiratory nitrate reductase, gamma subunit (EC:1.7.99.4); K00374 nitrate reductase 1, gamma subunit [EC:1.7.99.4]
Respiratory nitrate reductase, gamma subunit {ECO:0000313|EMBL:ADU98282.1}; EC=1.7.99.4 {ECO:0000313|EMBL:ADU98282.1};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Respiratory nitrate reductase, gamma subunit n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TWE4_ALIDB
SCNpilot_expt_500_bf_scaffold_203_3
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1655..2353)
DNA (699bp) protein (233aa)
nitrate reductase molybdenum cofactor assembly chaperone (EC:1.7.99.4); K00373 nitrate reductase 1, delta subunit rbh
Nitrate reductase molybdenum cofactor assembly chaperone n=2 Tax=Alicycliphilus denitrificans RepID=E8TWE3_ALIDB rbh
Nitrate reductase molybdenum cofactor assembly chaperone {ECO:0000313|EMBL:GAO26200.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_500_bf_scaffold_203_4
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2365..3888)
DNA (1524bp) protein (508aa)
nitrate reductase, beta subunit; K00371 nitrate reductase 1, beta subunit [EC:1.7.99.4] rbh
Nitrate reductase, beta subunit n=2 Tax=Alicycliphilus denitrificans RepID=E8TWE2_ALIDB rbh
Nitrate reductase, beta subunit {ECO:0000313|EMBL:ADU98280.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_500_bf_scaffold_203_5
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3904..5964)
DNA (2061bp) protein (687aa)
respiratory nitrate reductase subunit alpha apoprotein; K00370 nitrate reductase 1, alpha subunit [EC:1.7.99.4]
Respiratory nitrate reductase alpha subunit apoprotein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W362_ACISJ
Respiratory nitrate reductase alpha subunit apoprotein {ECO:0000313|EMBL:ABM40687.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_500_bf_scaffold_203_6

Not on your lists

6146..7819
DNA (1674bp) protein (558aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DLW0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD98201.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_expt_500_bf_scaffold_203_7
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7704..9149)
DNA (1446bp) protein (482aa)
nitrate transporter n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003718F88 rbh
Nitrate/nitrite transporter {ECO:0000313|EMBL:GAD23003.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
nitrite transporter; K02575 MFS transporter, NNP family, nitrate/nitrite transporter rbh
SCNpilot_expt_500_bf_scaffold_203_8
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9182..10540)
DNA (1359bp) protein (453aa)
Major facilitator superfamily MFS_1 n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TWD9_ALIDB
Nitrite/nitrate transporter protein {ECO:0000313|EMBL:GAO26196.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
major facilitator superfamily mfs_1; K02575 MFS transporter, NNP family, nitrate/nitrite transporter
SCNpilot_expt_500_bf_scaffold_203_9
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10611..11756
DNA (1146bp) protein (382aa)
C4-dicarboxylate transporter/malic acid transport protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T4S9_ACIDE rbh
C4-dicarboxylate ABC transporter {ECO:0000313|EMBL:KGM52287.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
c4-dicarboxylate transporter/malic acid transport protein
SCNpilot_expt_500_bf_scaffold_203_10
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11747..12406)
DNA (660bp) protein (220aa)
Response regulator receiver n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TWD8_ALIDB
response regulator receiver; K07684 two-component system, NarL family, nitrate/nitrite response regulator NarL
Response regulator receiver {ECO:0000313|EMBL:GAO26195.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_500_bf_scaffold_203_11
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12410..14350)
DNA (1941bp) protein (647aa)
multi-sensor signal transduction histidine kinase; K07673 two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Multi-sensor signal transduction histidine kinase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G3Q2_ALIDK
SCNpilot_expt_500_bf_scaffold_203_12
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14406..15101
DNA (696bp) protein (232aa)
Molybdenum cofactor guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316, ECO:0000256|SAAS:SAAS00049907}; Short=MoCo guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316};; EC=2.7.7.77 {ECO:0000256|HAMAP-Rule:MF_00316, ECO:0000256|SAAS:SAAS00049907};; GTP:molybdopterin guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316}; Mo-MPT guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316}; Molybdopterin guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316}; Molybdopterin-guanine dinucleotide synthase {ECO:0000256
mobA; molybdopterin-guanine dinucleotide biosynthesis protein MobA; K03752 molybdopterin-guanine dinucleotide biosynthesis protein A [EC:2.7.7.77]
Molybdenum cofactor guanylyltransferase n=1 Tax=Acidovorax sp. CF316 RepID=J1ERU3_9BURK
SCNpilot_expt_500_bf_scaffold_203_13
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15140..16762)
DNA (1623bp) protein (541aa)
AMP-dependent synthetase and ligase n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21QR2_RHOFD rbh
AMP-dependent synthetase and ligase rbh
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ABD71891.1}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
SCNpilot_expt_500_bf_scaffold_203_14
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16775..18013)
DNA (1239bp) protein (413aa)
thiolase n=1 Tax=Ideonella sp. B508-1 RepID=UPI000348B770 rbh
thiolase rbh
Thiolase {ECO:0000313|EMBL:ABD71892.1}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
SCNpilot_expt_500_bf_scaffold_203_15
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18095..19210)
DNA (1116bp) protein (372aa)
Saccharopine dehydrogenase n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21QR0_RHOFD rbh
saccharopine dehydrogenase rbh
Saccharopine dehydrogenase {ECO:0000313|EMBL:ABD71893.1}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
SCNpilot_expt_500_bf_scaffold_203_16
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19241..20476)
DNA (1236bp) protein (412aa)
Acyl-CoA dehydrogenase-like n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21QQ9_RHOFD rbh
acyl-CoA dehydrogenase-like protein rbh
Acyl-CoA dehydrogenase-like {ECO:0000313|EMBL:ABD71894.1}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
SCNpilot_expt_500_bf_scaffold_203_17
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20666..23374
DNA (2709bp) protein (903aa)
ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21QQ8_RHOFD rbh
ATP-dependent transcription regulator LuxR; K03556 LuxR family transcriptional regulator, maltose regulon positive regulatory protein rbh
ATP-dependent transcriptional regulator, MalT-like, LuxR family {ECO:0000313|EMBL:ABD71895.1}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
SCNpilot_expt_500_bf_scaffold_203_18
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23415..24434)
DNA (1020bp) protein (340aa)
PLP-dependent enzyme, histidinol-phosphate/aromatic aminotransferase or cobyric acid decarboxylase n=1 Tax=Polaromonas sp. CF318 RepID=J3CYD1_9BURK
putative pyridoxal phosphate-dependent transferase
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_expt_500_bf_scaffold_203_19
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24428..25423)
DNA (996bp) protein (332aa)
cobalamin biosynthesis protein CobD n=1 Tax=Acidovorax radicis RepID=UPI00023770BE
cobalamin biosynthesis protein cobd
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
SCNpilot_expt_500_bf_scaffold_203_20
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25423..25950)
DNA (528bp) protein (176aa)
methylated-DNA/protein-cysteine methyltransferase; K00567 methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
Methylated-DNA/protein-cysteine methyltransferase n=2 Tax=Alicycliphilus denitrificans RepID=E8U028_ALIDB
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_500_bf_scaffold_203_21
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26105..26473
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RSW9_ACCPU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV36021.1}; Flags: Precursor;; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
SCNpilot_expt_500_bf_scaffold_203_22
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26485..27009
DNA (525bp) protein (175aa)
ECF subfamily RNA polymerase sigma-24 subunit n=1 Tax=Acidovorax sp. KKS102 RepID=K0HUL2_9BURK
ECF subfamily RNA polymerase sigma-24 subunit
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_expt_500_bf_scaffold_203_23
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27031..27834
DNA (804bp) protein (268aa)
Uncharacterized protein n=2 Tax=Delftia acidovorans RepID=S2WGV1_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD37405.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
putative transmembrane anti-sigma factor
SCNpilot_expt_500_bf_scaffold_203_24
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27842..28423)
DNA (582bp) protein (194aa)
Cob(I)alamin adenosyltransferase n=1 Tax=Acidovorax sp. NO-1 RepID=H0C1G3_9BURK
ATP:corrinoid adenosyltransferase {ECO:0000313|EMBL:BAO80284.1}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
cob(I)alamin adenosyltransferase
SCNpilot_expt_500_bf_scaffold_203_25
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28413..29195)
DNA (783bp) protein (261aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI00036B56D8
ABC transporter-like protein
Tax=GWE1_Burkholderiales_65_30_curated
SCNpilot_expt_500_bf_scaffold_203_26
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29192..30265)
DNA (1074bp) protein (358aa)
Transport system permease n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MG89_9BURK
Transport system permease {ECO:0000313|EMBL:EIK88229.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
transport system permease; K02015 iron complex transport system permease protein
SCNpilot_expt_500_bf_scaffold_203_27
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30306..31193)
DNA (888bp) protein (296aa)
periplasmic-binding protein; K02016 iron complex transport system substrate-binding protein id=5081272 bin=GWF1_Burkholderiales_GWF1_66_17 species=Polaromonas sp. CF318 genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_500_bf_scaffold_203_28
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31190..31783)
DNA (594bp) protein (198aa)
adenosylcobinamide kinase (EC:2.7.1.156); K02231 adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62]
adenosylcobinamide-phosphate guanylyltransferase n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI00037585A2
Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase {ECO:0000313|EMBL:GAD22243.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCNpilot_expt_500_bf_scaffold_203_29
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31788..33635)
DNA (1848bp) protein (616aa)
TonB-dependent receptor n=1 Tax=Acidovorax sp. KKS102 RepID=K0I6C2_9BURK
TonB-dependent receptor
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
SCNpilot_expt_500_bf_scaffold_203_30
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33993..34211
DNA (219bp) protein (73aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003604264
Uncharacterized protein {ECO:0000313|EMBL:GAD22246.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein
Displaying items 1-30 of 54 in total

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