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SCNpilot_expt_500_bf_scaffold_285

Search features with annotation key words

Displaying items 1-30 of 105 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_285_1
Gluconobacter oxydans, Gluconobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

142..1740
DNA (1599bp) protein (533aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0HH18_RHIRD rbh
Uncharacterized protein {ECO:0000313|EMBL:AHK70508.1}; TaxID=1288313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconobacter.;" source="Gluconobacter oxydans DSM 3504.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_285_2
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1948..3459)
DNA (1512bp) protein (504aa)
AMP-dependent synthetase and ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3] rbh
AMP-dependent synthetase and ligase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W3S3_ACISJ rbh
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ABM40898.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_500_bf_scaffold_285_3
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3508..5685)
DNA (2178bp) protein (726aa)
penicillin-binding protein 1c (EC:2.4.1.129); K05367 penicillin-binding protein 1C [EC:2.4.1.-]
Penicillin-binding protein 1C {ECO:0000313|EMBL:ADV00933.1}; EC=2.4.1.129 {ECO:0000313|EMBL:ADV00933.1};; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Penicillin-binding protein 1C n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TZB2_ALIDB
SCNpilot_expt_500_bf_scaffold_285_4
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5682..8783)
DNA (3102bp) protein (1034aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(S) n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T452_ACIDE
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:CDM25002.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
PAS/PAC and Chase sensor-containing diguanylate cyclase/phosphodiesterase
SCNpilot_expt_500_bf_scaffold_285_5
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8882..14899)
DNA (6018bp) protein (2006aa)
alpha-2-macroglobulin n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI00036EE754
Alpha-2-macroglobulin domain protein {ECO:0000313|EMBL:GAD22459.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
alpha-2-macroglobulin; K06894 rbh
SCNpilot_expt_500_bf_scaffold_285_6
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15071..18382
DNA (3312bp) protein (1104aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21SZ9_RHOFD rbh
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase rbh
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
SCNpilot_expt_500_bf_scaffold_285_7
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18369..19334)
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MDT9_ACIET
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM34098.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_expt_500_bf_scaffold_285_8
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19443..20912)
DNA (1470bp) protein (490aa)
argininosuccinate lyase; K01755 argininosuccinate lyase [EC:4.3.2.1] rbh
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Argininosuccinate lyase n=2 Tax=Alicycliphilus denitrificans RepID=E8TZC4_ALIDB rbh
SCNpilot_expt_500_bf_scaffold_285_9
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20953..21993
DNA (1041bp) protein (347aa)
histidine kinase internal region protein; K08082 two-component system, LytT family, sensor histidine kinase AlgZ [EC:2.7.13.3]
Histidine kinase internal region n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WB10_ACISJ
Integral membrane sensor signal transduction histidine kinase {ECO:0000313|EMBL:GAO24531.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_500_bf_scaffold_285_10
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21990..22736
DNA (747bp) protein (249aa)
Response regulator receiver n=2 Tax=Alicycliphilus denitrificans RepID=E8TRG5_ALIDB
LytTR family two component transcriptional regulator; K08083 two-component system, LytT family, response regulator AlgR
Response regulator receiver {ECO:0000313|EMBL:ADU99066.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_500_bf_scaffold_285_11
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22751..23554)
DNA (804bp) protein (268aa)
Zinc/iron permease n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MDU3_ACIET rbh
zinc/iron permease rbh
Zinc/iron permease {ECO:0000313|EMBL:ACM34102.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_expt_500_bf_scaffold_285_12
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23604..24491)
DNA (888bp) protein (296aa)
carboxymethylenebutenolidase (EC:3.1.1.45); K01061 carboxymethylenebutenolidase [EC:3.1.1.45]
Carboxymethylenebutenolidase {ECO:0000313|EMBL:ABM43438.1}; EC=3.1.1.45 {ECO:0000313|EMBL:ABM43438.1};; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
Carboxymethylenebutenolidase n=2 Tax=Acidovorax RepID=A1WB13_ACISJ
SCNpilot_expt_500_bf_scaffold_285_13
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24593..25291)
DNA (699bp) protein (233aa)
Methyltransferase type 11 n=2 Tax=Alicycliphilus denitrificans RepID=E8U027_ALIDB rbh
methyltransferase type 11 rbh
Methyltransferase type 11 {ECO:0000313|EMBL:ADV01026.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_500_bf_scaffold_285_14
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25330..25635)
DNA (306bp) protein (102aa)
hypothetical protein id=12552468 bin=BDI species=Comamonas sp. B-9 genus=Comamonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_500_bf_scaffold_285_15
Comamonas aquatica, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25632..26339)
DNA (708bp) protein (236aa)
Branched-chain amino acid ABC transporter permease {ECO:0000313|EMBL:EXU80766.1}; TaxID=1457173 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas aquatica DA1877.;"
putative branched-chain amino acid permease (azaleucine resistance) id=12552469 bin=BDI species=Rhodanobacter denitrificans genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
putative branched-chain amino acid permease (azaleucine resistance)
SCNpilot_expt_500_bf_scaffold_285_16
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26373..26693)
DNA (321bp) protein (107aa)
transporter n=1 Tax=Comamonas sp. B-9 RepID=UPI00039562A8
Putative lipoprotein {ECO:0000313|EMBL:CDM23976.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
lipoprotein
SCNpilot_expt_500_bf_scaffold_285_17
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26810..29575)
DNA (2766bp) protein (922aa)
DNA polymerase I (EC:2.7.7.7); K02335 DNA polymerase I [EC:2.7.7.7] rbh
DNA polymerase I {ECO:0000313|EMBL:AEB85962.1}; EC=2.7.7.7 {ECO:0000313|EMBL:AEB85962.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
DNA polymerase I n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GDD3_ALIDK rbh
SCNpilot_expt_500_bf_scaffold_285_18
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29629..30831
DNA (1203bp) protein (401aa)
Beta-lactamase n=1 Tax=Acidovorax sp. NO-1 RepID=H0BTA1_9BURK rbh
Beta-lactamase {ECO:0000313|EMBL:EHL24381.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
beta-lactamase rbh
SCNpilot_expt_500_bf_scaffold_285_19
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30864..31178
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WB16_ACISJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM43441.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_500_bf_scaffold_285_20
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31221..32171
DNA (951bp) protein (317aa)
homoserine kinase (EC:2.7.1.39); K02204 homoserine kinase type II [EC:2.7.1.39]
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00301, ECO:0000256|SAAS:SAAS00085804}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00301};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00301};; EC=2.7.1.39 {ECO:0000256|HAMAP-Rule:MF_00301, ECO:0000256|SAAS:SAAS00085809};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Homoserine kinase n=2 Tax=Alicycliphilus denitrificans RepID=E8TQS8_ALIDB
SCNpilot_expt_500_bf_scaffold_285_21
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32237..33040
DNA (804bp) protein (268aa)
membrane protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036EC5B8
Uncharacterized protein {ECO:0000313|EMBL:GAD24070.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_285_22
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33235..35217
DNA (1983bp) protein (661aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GDD9_ALIDK
hypothetical protein; K07093
Uncharacterized protein {ECO:0000313|EMBL:AEB85968.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_500_bf_scaffold_285_23
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35288..36631)
DNA (1344bp) protein (448aa)
Voltage-gated chloride channel n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPD9_9GAMM
Voltage-gated chloride channel {ECO:0000313|EMBL:EIM01331.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
chloride channel protein EriC
SCNpilot_expt_500_bf_scaffold_285_24
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36672..39056)
DNA (2385bp) protein (795aa)
UvrD/REP helicase; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12] rbh
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
UvrD/REP helicase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TQS4_ALIDB rbh
SCNpilot_expt_500_bf_scaffold_285_25
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39091..40611)
DNA (1521bp) protein (507aa)
long-chain acyl-CoA synthetase; K12508 feruloyl-CoA synthase [EC:6.2.1.34] rbh
Long-chain acyl-CoA synthetase n=1 Tax=Comamonas testosteroni ATCC 11996 RepID=H1RJB1_COMTE rbh
Long-chain acyl-CoA synthetase {ECO:0000313|EMBL:EHN67644.1}; TaxID=1009852 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni ATCC 11996.;"
SCNpilot_expt_500_bf_scaffold_285_26
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40651..42285)
DNA (1635bp) protein (545aa)
acyl-CoA dehydrogenase n=1 Tax=Variovorax paradoxus RepID=UPI000364A934
acyl-CoA dehydrogenase
Acyl-CoA dehydrogenase-like protein {ECO:0000313|EMBL:ACY35538.1}; TaxID=688245 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (strain CNB-2).;"
SCNpilot_expt_500_bf_scaffold_285_27
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42436..43110
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI00036B2B79
TetR family transcriptional regulator {ECO:0000313|EMBL:KGH15907.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
TetR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_285_28
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

43389..44237
DNA (849bp) protein (283aa)
guanosine monophosphate reductase; K00364 GMP reductase [EC:1.7.1.7]
GMP reductase {ECO:0000256|HAMAP-Rule:MF_01511, ECO:0000256|SAAS:SAAS00082324}; EC=1.7.1.7 {ECO:0000256|HAMAP-Rule:MF_01511, ECO:0000256|SAAS:SAAS00043008};; Guanosine 5'-monophosphate oxidoreductase {ECO:0000256|HAMAP-Rule:MF_01511}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
GMP reductase n=2 Tax=Alicycliphilus denitrificans RepID=E8TQS3_ALIDB
SCNpilot_expt_500_bf_scaffold_285_29
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44271..45146)
DNA (876bp) protein (292aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BTC1_9BURK rbh
Putative uncharacterized protein {ECO:0000313|EMBL:EHL24401.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_285_30
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45432..46658
DNA (1227bp) protein (409aa)
Drug resistance transporter, Bcr/CflA subfamily n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TQ45_ALIDB
drug resistance transporter, bcr/cfla subfamily; K07552 MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein
Drug resistance transporter, Bcr/CflA subfamily {ECO:0000313|EMBL:ADU98979.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Displaying items 1-30 of 105 in total

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