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SCNpilot_expt_500_bf_scaffold_446

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_446_1
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(75..1340)
DNA (1266bp) protein (422aa)
diguanylate phosphodiesterase n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI000376D2E9 rbh
Diguanylate phosphodiesterase {ECO:0000313|EMBL:GAD20766.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
diguanylate phosphodiesterase; K07181 putative signal transduction protein containing EAL and modified HD-GYP domains rbh
SCNpilot_expt_500_bf_scaffold_446_2
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1360..2562)
DNA (1203bp) protein (401aa)
Diguanylate phosphodiesterase n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MEP8_ACIET rbh
diguanylate phosphodiesterase; K07181 putative signal transduction protein containing EAL and modified HD-GYP domains rbh
Diguanylate phosphodiesterase {ECO:0000313|EMBL:ACM32384.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_expt_500_bf_scaffold_446_3
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2672..3478)
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. CF316 RepID=J0K5Y1_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EJE49400.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_446_4
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3522..4046
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2X3N0_DELAC
Uncharacterized protein {ECO:0000313|EMBL:KEH14134.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
transferase
SCNpilot_expt_500_bf_scaffold_446_5
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4219..5184
DNA (966bp) protein (322aa)
Hsp33 chaperonin n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035C63ED
33 kDa chaperonin {ECO:0000256|SAAS:SAAS00038673}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hsp33 protein; K04083 molecular chaperone Hsp33
SCNpilot_expt_500_bf_scaffold_446_6
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5218..6984)
DNA (1767bp) protein (589aa)
Methyl-accepting chemotaxis sensory transducer n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WCA6_ACISJ rbh
methyl-accepting chemotaxis sensory transducer; K03406 methyl-accepting chemotaxis protein rbh
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:ABM43881.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_500_bf_scaffold_446_7
unknown

Not on your lists

comp(7220..7531)
DNA (312bp) protein (104aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_446_8
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7720..8673
DNA (954bp) protein (318aa)
Transcriptional regulator, LysR family-like protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y4R5_RAMTT
LysR family transcriptional regulator
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_expt_500_bf_scaffold_446_9
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8677..8970)
DNA (294bp) protein (98aa)
septation ring formation regulator EzrA n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037A4C34
Cell division protein FtsB {ECO:0000256|HAMAP-Rule:MF_00599, ECO:0000256|SAAS:SAAS00014481}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
cell division protein FtsB; K05589 cell division protein FtsB
SCNpilot_expt_500_bf_scaffold_446_10
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9003..10289)
DNA (1287bp) protein (429aa)
enolase (EC:4.2.1.11); K01689 enolase [EC:4.2.1.11] rbh
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Enolase n=2 Tax=Alicycliphilus denitrificans RepID=E8U251_ALIDB rbh
SCNpilot_expt_500_bf_scaffold_446_11
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10393..10683)
DNA (291bp) protein (97aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U252_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU98856.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_500_bf_scaffold_446_12
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10687..11544)
DNA (858bp) protein (286aa)
2-dehydro-3-deoxyphosphooctonate aldolase (EC:2.5.1.55); K01627 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
2-dehydro-3-deoxyphosphooctonate aldolase {ECO:0000256|HAMAP-Rule:MF_00056, ECO:0000256|SAAS:SAAS00078566}; EC=2.5.1.55 {ECO:0000256|HAMAP-Rule:MF_00056, ECO:0000256|SAAS:SAAS00078538};; 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00056}; KDO-8-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00056}; Phospho-2-dehydro-3-deoxyoctonate aldolase {ECO:0000256|HAMAP-Rule:MF_00056}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadacea
2-dehydro-3-deoxyphosphooctonate aldolase n=2 Tax=Alicycliphilus denitrificans RepID=E8U253_ALIDB
SCNpilot_expt_500_bf_scaffold_446_13
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11550..13196)
DNA (1647bp) protein (549aa)
pyrG; CTP synthetase (EC:6.3.4.2); K01937 CTP synthase [EC:6.3.4.2] rbh
CTP synthase {ECO:0000255|HAMAP-Rule:MF_01227}; EC=6.3.4.2 {ECO:0000255|HAMAP-Rule:MF_01227};; CTP synthetase {ECO:0000255|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000255|HAMAP-Rule:MF_01227}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
CTP synthase n=1 Tax=Acidovorax sp. (strain JS42) RepID=PYRG_ACISJ rbh
SCNpilot_expt_500_bf_scaffold_446_14
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13396..15009
DNA (1614bp) protein (538aa)
methyl-accepting chemotaxis sensory transducer id=12553118 bin=BDI species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
chemotaxis sensory transducer
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_500_bf_scaffold_446_15
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15047..16294
DNA (1248bp) protein (416aa)
phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase (EC:4.1.1.36 6.3.2.5); K13038 phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase [EC:4.1.1.36 6.3.2.5]
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase {ECO:0000313|EMBL:ACM32394.1}; EC=4.1.1.36 {ECO:0000313|EMBL:ACM32394.1};; EC=6.3.2.5 {ECO:0000313|EMBL:ACM32394.1};; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MEQ8_ACIET
SCNpilot_expt_500_bf_scaffold_446_16
unknown

Not on your lists

16291..16668
DNA (378bp) protein (126aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_446_17
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16682..17128
DNA (447bp) protein (149aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071036};; dUTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00116}; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W4R5_ACISJ
deoxyuridine 5'-triphosphate nucleotidohydrolase-like
SCNpilot_expt_500_bf_scaffold_446_18
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17171..17662
DNA (492bp) protein (164aa)
17 kDa surface antigen n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MER0_ACIET
17 kda surface antigen
17 kDa surface antigen {ECO:0000313|EMBL:ABM41241.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_500_bf_scaffold_446_19
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17680..18177)
DNA (498bp) protein (166aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
FKBP-type peptidylprolyl isomerase; K03775 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
UPI0003A54049 related cluster n=1 Tax=unknown RepID=UPI0003A54049
SCNpilot_expt_500_bf_scaffold_446_20
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18237..18743
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MER3_ACIET
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM32399.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_expt_500_bf_scaffold_446_21
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18919..19254
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Comamonas sp. B-9 RepID=UPI0003959187
hypothetical protein
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCNpilot_expt_500_bf_scaffold_446_22
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19342..20436)
DNA (1095bp) protein (365aa)
NlpBDapX family lipoprotein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MER5_ACIET
nlpbdapx family lipoprotein; K07287 lipoprotein-34
NlpBDapX family lipoprotein {ECO:0000313|EMBL:ACM32401.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_expt_500_bf_scaffold_446_23
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20468..21367)
DNA (900bp) protein (300aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086366}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
dihydrodipicolinate synthase; K01714 dihydrodipicolinate synthase [EC:4.2.1.52]
dihydrodipicolinate synthase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036C04D3
SCNpilot_expt_500_bf_scaffold_446_24
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21398..21772)
DNA (375bp) protein (125aa)
Methyltransferase type 11 n=2 Tax=Alicycliphilus denitrificans RepID=E8U263_ALIDB
methyltransferase type 11
Methyltransferase type 11 {ECO:0000313|EMBL:ADU98867.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_500_bf_scaffold_446_25
unknown

Not on your lists

comp(21953..22075)
DNA (123bp) protein (41aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_446_26
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22075..23289)
DNA (1215bp) protein (405aa)
Major facilitator superfamily MFS_1 n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q1D0_ACIAP rbh
major facilitator superfamily protein rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ADX45278.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCNpilot_expt_500_bf_scaffold_446_27
Curvibacter putative symbiont of Hydra magnipapillata, Curvibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23378..25348
DNA (1971bp) protein (657aa)
DNA topoisomerase 4 subunit B {ECO:0000256|HAMAP-Rule:MF_00938}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00938};; Topoisomerase IV subunit B {ECO:0000256|HAMAP-Rule:MF_00938}; TaxID=667019 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Curvibacter.;" source="Curvibacter putative symbiont of Hydra magnipapillata.;"
DNA topoisomerase IV subunit B (EC:5.99.1.3); K02622 topoisomerase IV subunit B [EC:5.99.1.-]
DNA topoisomerase 4 subunit B n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YGA7_9BURK
SCNpilot_expt_500_bf_scaffold_446_28
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25412..25741
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI000366E33A
hypothetical protein; K09803 hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
SCNpilot_expt_500_bf_scaffold_446_29
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25695..25958
DNA (264bp) protein (88aa)
Putative uncharacterized protein n=1 Tax=Oxalobacteraceae bacterium IMCC9480 RepID=F1VWM2_9BURK
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
SCNpilot_expt_500_bf_scaffold_446_30
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26060..28450
DNA (2391bp) protein (797aa)
DNA topoisomerase IV subunit A (EC:5.99.1.3); K02621 topoisomerase IV subunit A [EC:5.99.1.-] rbh
Topoisomerase IV subunit A n=1 Tax=uncultured bacterium A1Q1_fos_1134 RepID=L7W1W8_9BACT rbh
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
Displaying items 1-30 of 31 in total

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