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SCNpilot_expt_500_bf_scaffold_1546

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1546_1
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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168..1403
DNA (1236bp) protein (412aa)
Uncharacterized protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MH38_ACIET rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACM34666.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_expt_500_bf_scaffold_1546_2
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1407..2402
DNA (996bp) protein (332aa)
Uncharacterized protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MH39_ACIET rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACM34667.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_expt_500_bf_scaffold_1546_3
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2476..2706
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MH40_ACIET
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM34668.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_expt_500_bf_scaffold_1546_4
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3130..3822)
DNA (693bp) protein (231aa)
XRE family transcriptional regulator n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037408FC rbh
Response regulator {ECO:0000313|EMBL:GAD22596.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
Fis family two component transcriptional regulator rbh
SCNpilot_expt_500_bf_scaffold_1546_5
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3863..6160)
DNA (2298bp) protein (766aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
multi-sensor signal transduction histidine kinase (EC:2.7.3.-) rbh
histidine kinase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037F5E86 rbh
SCNpilot_expt_500_bf_scaffold_1546_6
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6157..6834)
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WCM5_ACISJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM44000.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_500_bf_scaffold_1546_7
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6806..8155)
DNA (1350bp) protein (450aa)
sun protein; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
Sun protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WCM6_ACISJ
Sun protein {ECO:0000313|EMBL:ABM44001.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_500_bf_scaffold_1546_8
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8152..8697)
DNA (546bp) protein (182aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003690DA3
Uncharacterized protein {ECO:0000313|EMBL:GAD22592.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein; K03744 LemA protein
SCNpilot_expt_500_bf_scaffold_1546_9
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8776..11655)
DNA (2880bp) protein (960aa)
DNA-directed RNA polymerase, beta' subunit; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
DNA-directed RNA polymerase subunit beta' n=2 Tax=Alicycliphilus denitrificans RepID=E8TVM6_ALIDB
SCNpilot_expt_500_bf_scaffold_1546_10
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11668..12711)
DNA (1044bp) protein (348aa)
DNA-directed RNA polymerase subunit beta'; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta'''' n=1 Tax=Curvibacter lanceolatus RepID=UPI00036814B9
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_expt_500_bf_scaffold_1546_11
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(12723..12920)
DNA (198bp) protein (66aa)
DNA-directed RNA polymerase subunit beta'; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=688245 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (strain CNB-2).;"
DNA-directed RNA polymerase subunit beta' n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KUW8_9BURK
SCNpilot_expt_500_bf_scaffold_1546_12
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13052..17176)
DNA (4125bp) protein (1375aa)
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
DNA-directed RNA polymerase subunit beta n=1 Tax=Acidovorax sp. (strain JS42) RepID=RPOB_ACISJ
SCNpilot_expt_500_bf_scaffold_1546_13
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(17454..17834)
DNA (381bp) protein (127aa)
50S ribosomal protein L7/L12 n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000371E7A2
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12
SCNpilot_expt_500_bf_scaffold_1546_14
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(17887..18393)
DNA (507bp) protein (169aa)
rplJ; 50S ribosomal protein L10; K02864 large subunit ribosomal protein L10 id=12551358 bin=BDI species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
rplJ; 50S ribosomal protein L10; K02864 large subunit ribosomal protein L10
SCNpilot_expt_500_bf_scaffold_1546_15
unknown

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comp(18405..18503)
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1546_16
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(18625..19320)
DNA (696bp) protein (232aa)
50S ribosomal protein L1 n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y0U3_RAMTT
rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_expt_500_bf_scaffold_1546_17
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(19321..19752)
DNA (432bp) protein (144aa)
50S ribosomal protein L11 n=1 Tax=Comamonas sp. B-9 RepID=UPI000395637F
rplK; 50S ribosomal protein L11; K02867 large subunit ribosomal protein L11
50S ribosomal protein L11 {ECO:0000255|HAMAP-Rule:MF_00736}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_expt_500_bf_scaffold_1546_18
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19879..20466)
DNA (588bp) protein (196aa)
Transcription termination/antitermination protein NusG n=1 Tax=Acidovorax sp. NO-1 RepID=H0C452_9BURK
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
NusG antitermination factor
SCNpilot_expt_500_bf_scaffold_1546_19
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20466..20849)
DNA (384bp) protein (128aa)
Protein translocase subunit SecE n=1 Tax=Acidovorax sp. KKS102 RepID=K0HYR6_9BURK
secE; preprotein translocase subunit SecE
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_500_bf_scaffold_1546_20

Not on your lists

comp(21015..21131)
DNA (117bp) protein (39aa)
tuf; elongation factor Tu (EC:3.6.5.3); K02358 elongation factor Tu
Elongation factor Tu (EF-Tu) (P-43) n=1 Tax=mine drainage metagenome RepID=E6PK11_9ZZZZ
Elongation factor Tu (EF-Tu) (P-43) {ECO:0000313|EMBL:CBH95262.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Displaying 20 items

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